View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18945_low_9 (Length: 456)
Name: NF18945_low_9
Description: NF18945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18945_low_9 |
 | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0286 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 13588 - 13152
Alignment:
| Q |
20 |
cattgaaattgcagtaatccataagtaaatgtgcatttgtttccacatgaaaataagcatataggaacaatatggatgcaaaatatgaatgttttcacac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13588 |
cattgaaattgcagtaatccataagtaaatgtgcatttgtttccacatgaaaataagcatataggaacaatatggatgcaaaatatgaatgttttcacac |
13489 |
T |
|
| Q |
120 |
gagattcagcccactttatctcttgttcctttttctatatggcctataatattttgnnnnnnnnn-ttaaaattgtctgaaaaatttcatgtccacaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13488 |
gagattcagcccactttatctcttgttcctttttctatacggcctataatattttgaaaagaaaaattaaaattgtctgaaaaatttcatgtccacaaat |
13389 |
T |
|
| Q |
219 |
atataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaa |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13388 |
atataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaa |
13289 |
T |
|
| Q |
319 |
caaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13288 |
caaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaa |
13189 |
T |
|
| Q |
419 |
cagaatacaaagggaaaagctacatacaagtctgtgc |
455 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13188 |
cagaatacaaagagaaaagctacatacaagtctgtgc |
13152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 455
Target Start/End: Original strand, 2169674 - 2170110
Alignment:
| Q |
20 |
cattgaaattgcagtaatccataagtaaatgtgcatttgtttccacatgaaaataagcatataggaacaatatggatgcaaaatatgaatgttttcacac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169674 |
cattgaaattgcagtaatccataagtaaatgtgcatttgtttccacatgaaaataagcatataggaacaatatggatgcaaaatatgaatgttttcacac |
2169773 |
T |
|
| Q |
120 |
gagattcagcccactttatctcttgttcctttttctatatggcctataatattttgnnnnnnnnn-ttaaaattgtctgaaaaatttcatgtccacaaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2169774 |
gagattcagcccactttatctcttgttcctttttctatacggcctataatattttgaaaagaaaaattaaaattgtctgaaaaatttcatgtccacaaat |
2169873 |
T |
|
| Q |
219 |
atataggtggaagaattctcggccagattatacttaccacacaatcgaactttgaattacaagagcctcttccctgaaaatgggaggggttaacacccaa |
318 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2169874 |
atataggtggaagaattcttggccagattatacttaccacatgaccaaacattgaattacaagagcctcttccctgaaaatgggaggggttaacacccaa |
2169973 |
T |
|
| Q |
319 |
caaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatataaacaaacctgaacgggaaaaaacactctctggaatagaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2169974 |
caaatatccatgcattatcagatgcaggttgaattgttttttctaaaggtaaatagatatatacaaacctgaacgggaaaaaacactctccggaatagaa |
2170073 |
T |
|
| Q |
419 |
cagaatacaaagggaaaagctacatacaagtctgtgc |
455 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2170074 |
cagaatacaaagagaaaagctacatacaagtctgtgc |
2170110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University