View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18946_low_1 (Length: 576)
Name: NF18946_low_1
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18946_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 569
Target Start/End: Complemental strand, 42341389 - 42340840
Alignment:
| Q |
20 |
ggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgccaaaagtcggctgtcgag |
119 |
Q |
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| T |
42341389 |
ggtgctatggcaaccggcataccagactgttgttccctaactacccctgctttaaccaagaaatcctccaatgtcatctcgccaaaagtcggctgtcgag |
42341290 |
T |
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| Q |
120 |
gggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctcagaccaaacttgttccacagttttcctgcagag |
219 |
Q |
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| T |
42341289 |
gggtagactcggtattctgagcaacattgttgatgttgtgatggttctgttgttctttgtgtatctcagaccaaacttgttccacagttttcctgcagag |
42341190 |
T |
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| Q |
220 |
aggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagctgcagacaagttattgttgttgctgttattattg |
319 |
Q |
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| T |
42341189 |
aggagcaggaatcgataacgaattttggcgaggaagacttgcctgtttgctaatccctttctgagctgcagacaagttattgttgttgctgttattattg |
42341090 |
T |
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| Q |
320 |
ttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttcatggatccgaaattcttgccgctatcacagaggc |
419 |
Q |
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| T |
42341089 |
ttggatgcagcttgttgttggttttcttctgcattccaaatactacttagaaactcatccatgttcatggatccgaaattcttgccgctatcacagaggc |
42340990 |
T |
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| Q |
420 |
tgtgttggaactcgtcaagggtgagtgagtatatggatgacgattgccttccgagcgatgaagaaatgacattgttgacgtcattcctggtcgcttcttc |
519 |
Q |
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| T |
42340989 |
tgtgttggaactcgtcgagggtgagtgagtatatggatgaagattgccttccgagcgatgaagaaatgacattgttgacgtcattcctgatcgcttcttc |
42340890 |
T |
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| Q |
520 |
tccttccctctgcaatgattctacctccccttgttgccaattcatctcac |
569 |
Q |
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| T |
42340889 |
tccttccctttgcaatgattctacctccccttgttgccaattcatctcac |
42340840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 16811286 - 16811243
Alignment:
| Q |
65 |
cctgctttaaccaagaaatcctccaatgtcatctcgccaaaagt |
108 |
Q |
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| T |
16811286 |
cctgctttcaccaagaaatcctccaatgtcatctctcctaaagt |
16811243 |
T |
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