View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18946_low_11 (Length: 262)
Name: NF18946_low_11
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18946_low_11 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 4713080 - 4712833
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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| T |
4713080 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
4712981 |
T |
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| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4712980 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
4712881 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4712880 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
4712833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 4847035 - 4846788
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| | |||| |
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| T |
4847035 |
aatatgtttgtactcttaacgtcacgatgtatgatattgtgcttcgcaccttcatgaagataattcaacccccttgctgcacctaatagaatctcgagtc |
4846936 |
T |
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| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
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| T |
4846935 |
tttgattccacctaagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatcatctctgcatcttc |
4846836 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4846835 |
gttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgaga |
4846788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 4698204 - 4697957
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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||||| || |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||| | || |||||||| | |||||||| | |||| |
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| T |
4698204 |
aatatgttggtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgaagataatgtaggcctcttgctgcccccaatagaatctcgagtc |
4698105 |
T |
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| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
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| T |
4698104 |
tcttcttccaagtaagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatcatctctgcaccttc |
4698005 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4698004 |
gttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgaga |
4697957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 4784849 - 4784602
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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||||| ||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| |||| || |||| ||||||||| | ||| | |
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| T |
4784849 |
aatatgtttgtactcttcacgtcacggtgtatgatattgtgcttcgcacctgcatgcagataatgcaacccccgcgcggcacctaatagaatctcaagcc |
4784750 |
T |
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| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
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| T |
4784749 |
tctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctacaccttc |
4784650 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4784649 |
attgcaatatccaataagtgaaaccaagtgaatatgacgaagctgaga |
4784602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 4862991 - 4863238
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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||||| || |||||||| |||||||||||||||||||| ||||| |||| ||||||||||||| || ||||||||||| | || ||||| | ||||| |
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| T |
4862991 |
aatatgttggtactcttcacgtcacggtgtatgatattgtgctttacaccagcatgaagataatgtaacccccttgctgcccccaacagaatctcaagtc |
4863090 |
T |
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| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
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| | ||||| |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| ||||||||||| || |||| |
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| T |
4863091 |
tcttcttccaagtaagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatcatctcctcaccttc |
4863190 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4863191 |
gttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgaga |
4863238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 15 - 262
Target Start/End: Complemental strand, 4817278 - 4817031
Alignment:
| Q |
15 |
aatatatttgtactcttaacgtcacggtgtatgatattatgcttcgcaccttcatgaagataatgcaatccccttgctgcacataatagaatattaagtc |
114 |
Q |
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||||| ||||||||||| || ||||||||||||||||| |||||||||||| |||| | ||||||||| |||| || |||| ||||||||| | ||| | |
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| T |
4817278 |
aatatgtttgtactcttcacatcacggtgtatgatattgtgcttcgcacctgcatgcaaataatgcaacccccgcgcggcacctaatagaatctcaagcc |
4817179 |
T |
|
| Q |
115 |
tttgattccacctaagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatcatctctgcatcttc |
214 |
Q |
| |
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| T |
4817178 |
tctgcttccaggtaagaggtttgttatctgatccataaagatattcacatagactgccacgttgcatgaagtcataaacgagaatcatctctacaccttc |
4817079 |
T |
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| Q |
215 |
attgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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| T |
4817078 |
attgcaatatccaataagtgaaaccaagtgaatatgacgaagctgaga |
4817031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 4666208 - 4666284
Alignment:
| Q |
186 |
tcataaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgaga |
262 |
Q |
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|||||||| ||||||||||||| || |||||||||||||| | ||||| || |||||||| || ||||||||||| |
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| T |
4666208 |
tcataaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgaga |
4666284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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