View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18946_low_13 (Length: 209)

Name: NF18946_low_13
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18946_low_13
NF18946_low_13
[»] chr7 (3 HSPs)
chr7 (74-201)||(1608831-1608960)
chr7 (82-181)||(2187860-2187960)
chr7 (74-181)||(19632944-19633053)
[»] chr5 (3 HSPs)
chr5 (74-181)||(37806540-37806650)
chr5 (118-181)||(37627431-37627495)
chr5 (87-166)||(33614707-33614785)
[»] chr8 (4 HSPs)
chr8 (82-181)||(29822632-29822733)
chr8 (127-181)||(7094160-7094216)
chr8 (127-181)||(7097893-7097949)
chr8 (127-166)||(45463058-45463097)
[»] chr1 (1 HSPs)
chr1 (82-201)||(41313953-41314075)
[»] chr2 (2 HSPs)
chr2 (127-201)||(19215544-19215620)
chr2 (133-188)||(19589281-19589337)
[»] chr4 (2 HSPs)
chr4 (87-162)||(637728-637803)
chr4 (144-186)||(11992147-11992190)
[»] chr3 (1 HSPs)
chr3 (133-181)||(8377591-8377641)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 1608960 - 1608831
Alignment:
Q  74 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 171  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1608960 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaaggaaaagggcgctccattttttattttatata 1608861  T
Q  172 tgtatttactggttgattgaatgatgatgt 201  Q
    ||||||||||||||| || || ||||||||    
T  1608860 tgtatttactggttgtttaaaggatgatgt 1608831  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 2187860 - 2187960
Alignment:
Q  82 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttac 180  Q
    |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  2187860 attcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttac 2187959  T
Q  181 t 181  Q
    |    
T  2187960 t 2187960  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 19633053 - 19632944
Alignment:
Q  74 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatata 171  Q
    |||||||| |||||||||||||||||||| ||||| | || ||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19633053 caagtgtagattcagtggagcaaagaccatgagtataaatattaatagctgctatattgttaaggtaagggaaagggcgctccattttttattttatata 19632954  T
Q  172 tgtatttact 181  Q
    ||||||||||    
T  19632953 tgtatttact 19632944  T

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Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 37806650 - 37806540
Alignment:
Q  74 caagtgta-attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatat 170  Q
    |||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||   |||||||    
T  37806650 caagtgtagattcagtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatat 37806551  T
Q  171 atgtatttact 181  Q
    |||||||||||    
T  37806550 atgtatttact 37806540  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 37627495 - 37627431
Alignment:
Q  118 tagctgctatattgctaaggtaaggaaaagggcgctccatttttta-tttatatatgtatttact 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  37627495 tagctgctatattgctaaggtaagggaaagggcgctccattttttattttatatatgtatttact 37627431  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 33614785 - 33614707
Alignment:
Q  87 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccattttttattt 166  Q
    ||||||||||||||| | || || |||||| ||||  |||| | |||||||||||||||||||| ||||||| |||||||    
T  33614785 gtggagcaaagaccatgggttgaaatcttaatagcgactatct-gctaaggtaaggaaaagggcactccattatttattt 33614707  T

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Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 29822632 - 29822733
Alignment:
Q  82 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtattta 179  Q
    ||||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||||||    
T  29822632 attcagtggagcaaataccacgagttgaaatcttaatagctgctatattgctaaggtaagggaaagggcgctccatttttttattttatatatgtattta 29822731  T
Q  180 ct 181  Q
    ||    
T  29822732 ct 29822733  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 7094216 - 7094160
Alignment:
Q  127 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 181  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7094216 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7094160  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 7097949 - 7097893
Alignment:
Q  127 tattgctaaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 181  Q
    ||||| |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  7097949 tattgttaaggtaagggaaagggcgctccatttttttattttatatatgtatttact 7097893  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 45463097 - 45463058
Alignment:
Q  127 tattgctaaggtaaggaaaagggcgctccattttttattt 166  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45463097 tattgctaaggtaagggaaagggcgctccattatttattt 45463058  T

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Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 41314075 - 41313953
Alignment:
Q  82 attcagtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt---atttatatatgtattt 178  Q
    |||| ||||||||||||||| ||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||||||||    |||||||||||| ||    
T  41314075 attccgtggagcaaagaccatgagtagaaatattaatagctgctatattgctaaggtaagggaaatggcgctccattttttctattttatatatgtagtt 41313976  T
Q  179 actggttgattgaatgatgatgt 201  Q
    ||| |||| |  |||||||||||    
T  41313975 acttgttgttaaaatgatgatgt 41313953  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 19215544 - 19215620
Alignment:
Q  127 tattgctaaggtaaggaaaagggcgctccattttt-ta-tttatatatgtatttactggttgattgaatgatgatgt 201  Q
    ||||| |||||||||| |||||||||||||||||| || |||||||||||||||||| |||| |  |||||||||||    
T  19215544 tattgttaaggtaagggaaagggcgctccatttttctattttatatatgtatttacttgttgttaaaatgatgatgt 19215620  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 19589281 - 19589337
Alignment:
Q  133 taaggtaaggaaaagggcgctccatttttta-tttatatatgtatttactggttgat 188  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| |||| ||||||    
T  19589281 taaggtaaggaaaatggcgctccattatttattttttatatgtatctacttgttgat 19589337  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 637728 - 637803
Alignment:
Q  87 gtggagcaaagaccacgagtagatatcttattagctgctatattgctaaggtaaggaaaagggcgctccatttttt 162  Q
    |||||||||||||||||||| || ||||||  |||||||   ||| |||||||||| |||| ||||||||| ||||    
T  637728 gtggagcaaagaccacgagttgaaatcttaacagctgctgctttgttaaggtaagggaaagtgcgctccatatttt 637803  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 11992190 - 11992147
Alignment:
Q  144 aaagggcgctccatttttta-tttatatatgtatttactggttg 186  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  11992190 aaagggcgctccattttttattttatatatgtatttacttgttg 11992147  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 8377591 - 8377641
Alignment:
Q  133 taaggtaaggaaaagggcgctccatttttt--atttatatatgtatttact 181  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||    
T  8377591 taaggtaagggaaagggcgctccatttttttattttatatatgtatttact 8377641  T

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