View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18946_low_2 (Length: 565)
Name: NF18946_low_2
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18946_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 12 - 547
Target Start/End: Original strand, 30074188 - 30074723
Alignment:
| Q |
12 |
atgaaagttaaaagaagtttttggcctctgcaatagtgtctttattggaagtgtggtgtgtgtcattgcattctgtgaactcttcataaccaatatgcgt |
111 |
Q |
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| T |
30074188 |
atgaaagttaaaagaagtttttggcctctgcaatagtgtctttattggaagtgtggtgtgtgtcattgcattctgtgaactcttcataaccaatatgcgt |
30074287 |
T |
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| Q |
112 |
ctcttgcagaaattgaaaaattcaaggagattgggaatgaaagttcctcacatgacgatgatggctcaaccaaatgtagaagtgaagctgctggaccaag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
30074288 |
ctcttgcagaaattgaaaaattcaaggagattgggaatgaaagttcctcacatgatgataatggctcaatcaaatgtagaagtgaagctgctggaccaag |
30074387 |
T |
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| Q |
212 |
tgctgttgatctacaatttcatgattcatgctcatccggccattctgatgaacaaaattcatcaagttccagggagcttcaaatagcaagcctgacagaa |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074388 |
tgctgttgatctagaatttcatgattcatgctcatccggccattctgatgaacaaaattcatcaagttccagggagcttcaaatagcaagcctgacagaa |
30074487 |
T |
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| Q |
312 |
aaaatagacattttggaaaataagttataccgattgaagtgcgatcttgaagaaagggatggcaggattctgatacttgaatccgacctttatactaagg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074488 |
aaaatagacattttggaaaataagttataccgattgaagtgcgatcttgaacaaagggatggcaggattctgatacttgaatccgacctttatactaagg |
30074587 |
T |
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| Q |
412 |
aagaatctactagcacaataggtgaaaaatgtaaagagctggagtctgagcttgagagcctttttctgcaaaaggttgaagccgaggtcaaataccttac |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074588 |
aagaatctactagcacaataggtgaaaaatgtaaagagctggagtctgagcttgagagcctttttctgcaaaaggttgaagccgaggtcaaataccttac |
30074687 |
T |
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| Q |
512 |
cataaaaatgatgatgaagagcttgaaggttgcatc |
547 |
Q |
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||| |||| |||||||||||||||||||||||||| |
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| T |
30074688 |
catcaaaaatatgatgaagagcttgaaggttgcatc |
30074723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 21465572 - 21465639
Alignment:
| Q |
172 |
atggctcaaccaaatgtagaagtgaagctgctggaccaagtgctgttgatctacaatttcatgattca |
239 |
Q |
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| T |
21465572 |
atggctcaaccaaatgtagaagtgaagctgctggaccaagtgttgttgatctagaattccatgattca |
21465639 |
T |
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