View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18946_low_6 (Length: 427)

Name: NF18946_low_6
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18946_low_6
NF18946_low_6
[»] scaffold0364 (2 HSPs)
scaffold0364 (1-413)||(12489-12900)
scaffold0364 (136-223)||(10778-10865)
[»] chr7 (2 HSPs)
chr7 (114-224)||(16032289-16032397)
chr7 (127-225)||(12731687-12731785)
[»] scaffold0107 (1 HSPs)
scaffold0107 (127-225)||(33831-33929)
[»] chr1 (1 HSPs)
chr1 (176-224)||(1938268-1938316)
[»] chr6 (1 HSPs)
chr6 (114-233)||(3067127-3067245)
[»] scaffold0003 (1 HSPs)
scaffold0003 (175-224)||(104087-104136)
[»] chr8 (2 HSPs)
chr8 (175-224)||(11860556-11860605)
chr8 (2-30)||(11860817-11860845)
[»] chr3 (1 HSPs)
chr3 (2-30)||(28555814-28555842)


Alignment Details
Target: scaffold0364 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 12489 - 12900
Alignment:
Q  1 tgataatcataacataaacaaacttgacaactccatacatattattcccccttttaaaacttataaagctcatcatcttcttacaaatattatatagttt 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12489 tgataatcataacataaacaaacttgacaacttcatacatattattcccccttttaaaacttctaaagctcatcatcttcttacaaatattatatagttt 12588  T
Q  101 ttagatgctatcaagttgtaacaaaaccttcttaaaattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaac 200  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12589 ttagatgctattaagttgtaacaaaaccttcttaaaattagaacaattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaac 12688  T
Q  201 ttagtaaagaggtcacataaaaaacttatcaatagtgacaattcaatctcnnnnnnnnaactatgtttccattattttagaacctttcatgagagaaaag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||    
T  12689 ttagtaaagaggtcacataaaaaacttatcaatagtgacaattcaatctttttttttttactatgtttccattattttagaacctttcatgagagaaaag 12788  T
Q  301 ggaaaatcacaaaatatgaataaatatttttggatttcaagctacgaaaggttgaaatgcaacaatctctcatagttttaaaggttgtaataaccttgat 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12789 ggaaaatcacaaaatatgaat-aatatttttggatttcaagctacgaaaggttgaaatgcaacaacctctcatagttttaaaggttgtaataaccttgat 12887  T
Q  401 ttctattgtgttt 413  Q
    |||||||||||||    
T  12888 ttctattgtgttt 12900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 10778 - 10865
Alignment:
Q  136 aattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaa 223  Q
    |||||||||||||||||||||| |  |||||| || | |||||||  ||||||||| |||   ||||| |||||||||||||||||||    
T  10778 aattagaataattattaaatttatgatatgtacatcaaagtgttgcatttgtccctatagcttacttaataaagaggtcacataaaaa 10865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 16032289 - 16032397
Alignment:
Q  114 agttgtaacaaaaccttcttaaaattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaacttagtaaagaggt 213  Q
    |||||||| ||||||||  |||||||||||||||||||||||  |||||| ||| || | ||||||||| |||||||||||| |  |||||||||||| |    
T  16032289 agttgtaa-aaaaccttgataaaattagaataattattaaatgccttttaagtaaattaaagtgttgtg-ttgtccctttagcatgcttagtaaagagat 16032386  T
Q  214 cacataaaaaa 224  Q
    || ||||||||    
T  16032387 catataaaaaa 16032397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 12731687 - 12731785
Alignment:
Q  127 ccttcttaaaattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaaac 225  Q
    ||||| |||||||||||| ||| |||||| |||  || |||||  | |||||| | ||||||||||||| || ||||||||| ||||||||||||||||    
T  12731687 ccttcctaaaattagaatcattgttaaatatctcctaagtataacaaagtgttatttttgtccctttagcaaccttagtaaacaggtcacataaaaaac 12731785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 33831 - 33929
Alignment:
Q  127 ccttcttaaaattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaaac 225  Q
    ||||| |||||||||||| ||| |||||| ||| ||| |||||  | |||||| | ||||||||||||| |  ||||||||| ||||||||||||||||    
T  33831 ccttcctaaaattagaatcattgttaaatatctcttaagtataacaaagtgttatttttgtccctttagcacccttagtaaacaggtcacataaaaaac 33929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 1938268 - 1938316
Alignment:
Q  176 tgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaaa 224  Q
    |||||||||||||||||||| | ||||| ||||||||| ||||||||||    
T  1938268 tgttgtgtttgtccctttagcacacttattaaagaggtaacataaaaaa 1938316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 233
Target Start/End: Complemental strand, 3067245 - 3067127
Alignment:
Q  114 agttgtaacaaaaccttcttaaaattagaataattattaaatttcttttatgtatatgacagtgttgtgtttgtccctttagaaaacttagtaaagaggt 213  Q
    |||||||| ||| ||||| |||||||  ||| |||||||||| ||| ||| ||| || |  ||||| | ||||||||||||  | ||||||| ||||||     
T  3067245 agttgtaaaaaatccttcctaaaattgaaatcattattaaatgtctcttaagtacatcattgtgttatttttgtccctttaacacacttagt-aagaggg 3067147  T
Q  214 cacataaaaaacttatcaat 233  Q
    ||||||||||||||| ||||    
T  3067146 cacataaaaaacttaacaat 3067127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 104087 - 104136
Alignment:
Q  175 gtgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaaa 224  Q
    |||||||||||||| ||| |||  | ||||||||||||||||||||||||    
T  104087 gtgttgtgtttgtctcttcagagcatttagtaaagaggtcacataaaaaa 104136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 11860605 - 11860556
Alignment:
Q  175 gtgttgtgtttgtccctttagaaaacttagtaaagaggtcacataaaaaa 224  Q
    ||||||||||||| ||||||| | |||| |||||||||||||| ||||||    
T  11860605 gtgttgtgtttgttcctttagcacactttgtaaagaggtcacacaaaaaa 11860556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 11860845 - 11860817
Alignment:
Q  2 gataatcataacataaacaaacttgacaa 30  Q
    |||||||||||||||||||||||||||||    
T  11860845 gataatcataacataaacaaacttgacaa 11860817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 28555814 - 28555842
Alignment:
Q  2 gataatcataacataaacaaacttgacaa 30  Q
    |||||||||||||||||||||||||||||    
T  28555814 gataatcataacataaacaaacttgacaa 28555842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University