View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18946_low_7 (Length: 403)
Name: NF18946_low_7
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18946_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 38133285 - 38133660
Alignment:
| Q |
10 |
attatactactactaccaaggttagaaaatctcttttcttattattttctttcttcgattactgatgttaacattagaccatattatatatagatgatcg |
109 |
Q |
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| T |
38133285 |
attatactactactaccaaggttagaaaatctcttttcttattattttctttctgcgattactgatgttaacattagaccatattatatatagctcat-g |
38133383 |
T |
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| Q |
110 |
atgatactaatttggtactgctggtgccaattttattgattacttaactgattaagcacatatgttgaaaaatctgtatacctcttccttgttttgagaa |
209 |
Q |
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| T |
38133384 |
atgatactaatttgttactgctggtgccaattttattgattacttaactgattaagcacatatgttgaaaaatctgtatacctcttccttgttttgagaa |
38133483 |
T |
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| Q |
210 |
atgttaccaaaattaatacaaagagaagtggtattgtgtactatgatagtgttgttgtttcaggttaacaatataatgctaaaactgtaattagttaagt |
309 |
Q |
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| T |
38133484 |
atgttaccaaaattaatacaaagagaagtgatattgtgtactatgatagtgttgttgtttcaggttaacaatataatgctaaaactgtaattagttaagt |
38133583 |
T |
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| Q |
310 |
ttctggtgttacaagtatttgttgaactaaaaccattgatcctaaatctttttcttagaataaattaacttcaaatt |
386 |
Q |
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| T |
38133584 |
ttctggtgttacaagtatttgttgaactaaaaccattgatcctaaatctttttcttagaataaattaagttcaaatt |
38133660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 38139709 - 38139926
Alignment:
| Q |
17 |
tactactaccaaggttagaaaatctcttttcttattattttctttcttcgattactgatgttaacattagaccatattatatatagatgatcgatgatac |
116 |
Q |
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| T |
38139709 |
tactactaccaaggtcagata-tctcttttcttatgtttttctttctgtgattactgat--taacattagactataatatatatagatgatgg----tat |
38139801 |
T |
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| Q |
117 |
taatttggtactgctggtgccaattttattgattacttaactgattaagcacatatgttgaaaaatctgtata----cctcttccttgttttgagaaatg |
212 |
Q |
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| T |
38139802 |
taatttgttacttcttatggcaattttattgattaattaactgattgagcacacatatggtaaaatctacataatgttctcctaattgttttgagaaata |
38139901 |
T |
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| Q |
213 |
ttaccaaaattaatacaaagagaag |
237 |
Q |
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| T |
38139902 |
ttacccaaattaatactaagagaag |
38139926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 323 - 374
Target Start/End: Original strand, 38140065 - 38140116
Alignment:
| Q |
323 |
agtatttgttgaactaaaaccattgatcctaaatctttttcttagaataaat |
374 |
Q |
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| T |
38140065 |
agtaattgttgaactaaaaccattgatcctaaatctttttcttagaataaat |
38140116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 323
Target Start/End: Original strand, 38139974 - 38140026
Alignment:
| Q |
271 |
aggttaacaatataatgctaaaactgtaattagttaagtttctggtgttacaa |
323 |
Q |
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| T |
38139974 |
aggttaacaatataatgctaaaactgtatttggttaagtttgtagtgttacaa |
38140026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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