View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18946_low_9 (Length: 371)
Name: NF18946_low_9
Description: NF18946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18946_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 57 - 355
Target Start/End: Complemental strand, 17750639 - 17750340
Alignment:
| Q |
57 |
atgtatggcgtgtgtgcaattaatacacaagcttactatccagtcaaaaattctggagtagaatctgaatctagcaagtcaacaagtgttatctttgact |
156 |
Q |
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| T |
17750639 |
atgtatggcgtgtgtgcaattaatacacaagcttactatccagtcaaaaattctggagtagaatctgaatctagcaagtcaacaagtgttatctttgact |
17750540 |
T |
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| Q |
157 |
attctcccttcatgtaagaaatccgagaactaggaactcatgtattagttccattttcgatgatcaagaataagctaaagtcctcgcaaaat-aataagt |
255 |
Q |
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| T |
17750539 |
attctcccttcatgtaagaaatccgagaactaggaactcatgtattagttccattttcgatgatcaagaataagttaaagtcctcgcaaaataaataagt |
17750440 |
T |
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| Q |
256 |
tgaaatttgaattcctgtttaatgtgtctagaatttgtgtgtgagggcgttcatgatgttgttttcaacacctcaactcccctattctatatgttgtatc |
355 |
Q |
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| T |
17750439 |
tgaaatttgaattcctgtttaatgtgtctagaatttgtgtgtgagggcgttcatgatgttgttttcaacacctcaactcccctattctatatgttgtatc |
17750340 |
T |
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