View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_10 (Length: 533)
Name: NF18947_high_10
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 31761517 - 31762036
Alignment:
| Q |
14 |
gttcactgaggtattcgaagccaaaacagtaacacacaatgattcatattttgtactcaatcattaacaagaatgaaacacataataaattgatatgttg |
113 |
Q |
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| T |
31761517 |
gttcactcaggtattcgaagccaaaacagtaacacacaatgattcatattttgtactcaatcattaacaagaatgaaacacataataaattgatatgttg |
31761616 |
T |
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| Q |
114 |
tataccaaattagactattggtgatttcattgtacgaagtagatatagattttagttatactacactacacatctgtttcaaactgcgacaggtttgcca |
213 |
Q |
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| T |
31761617 |
tataccaaattagactattggtgatttcattgtacgaagtagatatagattttagttatactacactacacatctgtttcaaactgcggcaggtttgcca |
31761716 |
T |
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| Q |
214 |
tttctcgcgtccctaagcttctcacggcacaagctacaactagtagcttcttaatagatgcatattaagatatgtgtggatgcggcgtcgaacacatgcc |
313 |
Q |
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| T |
31761717 |
tttctcgcgtccctaagcttctcatggcacaagctacaactagtagcttcttattagatgcacattaagatatgtgtggatgcggcgtcgaacacatgct |
31761816 |
T |
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| Q |
314 |
acatgtgtttcatatttggtttctgtgacatagcctcaatttgacaacaggtgctataagaaatagtttttgacttgaaaaatttgcactactttttaca |
413 |
Q |
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| T |
31761817 |
acatgtgtttcatatttggtttctgtgacatagcctcaatttgacaataggtgctataagaaatagtttttgacttgaaaaatttgcactactttttaca |
31761916 |
T |
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| Q |
414 |
tcaaactgattttagagtaaaaacatataaacataagttacatcacttcaaactcaattataacaaatcaactcgagaaaatcaattctatacataatca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761917 |
tcaaactgattttagagtaaaaacatataaacataagttacatcacttcaaactcatttataacaaatcaactcgagaaaatcaattctatacataatca |
31762016 |
T |
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| Q |
514 |
catttatcaaaagctcaccc |
533 |
Q |
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| T |
31762017 |
catttatcaaaagctcaccc |
31762036 |
T |
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