View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_high_13 (Length: 499)

Name: NF18947_high_13
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_high_13
NF18947_high_13
[»] chr3 (15 HSPs)
chr3 (18-499)||(50904871-50905352)
chr3 (18-264)||(38043719-38043964)
chr3 (120-364)||(48838834-48839077)
chr3 (21-184)||(55084682-55084844)
chr3 (21-184)||(38028848-38029008)
chr3 (21-184)||(50909858-50910018)
chr3 (21-175)||(38033861-38034012)
chr3 (21-175)||(38036875-38037026)
chr3 (21-128)||(38024957-38025064)
chr3 (21-128)||(38031409-38031516)
chr3 (21-184)||(38040163-38040323)
chr3 (21-100)||(48840793-48840872)
chr3 (416-499)||(38043484-38043566)
chr3 (21-127)||(50911951-50912057)
chr3 (327-393)||(38043575-38043641)
[»] chr4 (22 HSPs)
chr4 (18-352)||(17970022-17970360)
chr4 (41-100)||(27444896-27444955)
chr4 (19-100)||(27526192-27526273)
chr4 (43-100)||(27554288-27554345)
chr4 (21-101)||(27431230-27431310)
chr4 (19-95)||(27469444-27469520)
chr4 (21-97)||(27498397-27498473)
chr4 (19-98)||(27505782-27505861)
chr4 (19-98)||(27513856-27513935)
chr4 (21-100)||(27557468-27557547)
chr4 (41-95)||(27486967-27487021)
chr4 (19-95)||(27476671-27476747)
chr4 (20-95)||(27500419-27500494)
chr4 (21-100)||(27415603-27415679)
chr4 (18-95)||(27523482-27523559)
chr4 (46-97)||(27507920-27507971)
chr4 (41-95)||(27501301-27501355)
chr4 (64-98)||(27563471-27563505)
chr4 (64-98)||(27566076-27566110)
chr4 (21-98)||(27414386-27414463)
chr4 (21-98)||(27425793-27425870)
chr4 (64-100)||(27570174-27570210)
[»] chr2 (1 HSPs)
chr2 (18-352)||(3073292-3073630)
[»] chr8 (2 HSPs)
chr8 (21-184)||(21604836-21604996)
chr8 (23-128)||(21607380-21607485)
[»] chr5 (2 HSPs)
chr5 (41-96)||(1754343-1754398)
chr5 (21-100)||(1756839-1756918)


Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 50904871 - 50905352
Alignment:
Q  18 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904871 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgat 50904970  T
Q  118 gcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgtttcaaacaacagactaaacctctcaaatttaagga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50904971 gcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgtttcaaacaacagactaaacctctcaaatttaagga 50905070  T
Q  218 aaagagtatttatcttttgatgcttgagtatgtgaatgatttgtgatggaaagtagtagtgtatttatagtcttcaggagtttcttcaaatccatttctt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50905071 aaagagtatttatcttttgatgcttgagtatgtgaatgatttgtgatggaaagtagtagtgtatttatagtcttcaagagtttcttcaaatccatttctt 50905170  T
Q  318 tgagaaattaaattattgttaaaggatgggctccatgagatgagggaacacatggtattgtcttttgatgtctctccataaatcatggctcaacaagttc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50905171 tgagaaattaaattattgttaaaggatgggctccatgagatgagggaacacatggtattgtcttttgatgtctctccataaatcatggctcaacaagttc 50905270  T
Q  418 aataagagtgcatatataataagccccactatttgaaagaaaggccagcagagtacccacttggaagtcaaatgagatggct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50905271 aataagagtgcatatataataagccccactatttgaaagaaaggccagcagagtacccacttggaagtcaaatgagatggct 50905352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 38043964 - 38043719
Alignment:
Q  18 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgat 117  Q
    |||||| |||||||| |||||| |||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||  ||||   ||||    
T  38043964 agtttgattcaagtatgacatagggatcacaaaccgcttcatttcctctccaaagtacactgcaagatagctctttggcacatttgtgactttcaatgat 38043865  T
Q  118 gcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgtttcaaacaacagactaaacctctcaaatttaagga 217  Q
    | |||||| || ||||| |||||||||  ||||||||| ||||||  |||||||||||||||||||||||| || |  || || |||||||||||| | |    
T  38043864 gtttggctgcttctaaatgaagcccttactatagctgcaggtaaatggaagcccattttaaatgtttcaaagaataagcttaagctctcaaatttacgta 38043765  T
Q  218 aaagagtatttatcttttgatgcttgagtatgtgaatgatttgtgat 264  Q
    ||| ||||||||||||||||||||| ||  ||||||||| |||||||    
T  38043764 aaa-agtatttatcttttgatgcttcagcgtgtgaatgacttgtgat 38043719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 120 - 364
Target Start/End: Original strand, 48838834 - 48839077
Alignment:
Q  120 ttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgtttcaaacaacagactaaacctctcaaatttaaggaaa 219  Q
    ||||||||| |||||||  ||| ||||||| ||||| ||||||| ||||||| |  ||||||||||||| | ||  ||||| ||||||||||||||||||    
T  48838834 ttggctactgctaaaggt-gccattcttattgctgcaggtaaacggaagcccttgctaaatgtttcaaagagcaagctaaaactctcaaatttaaggaaa 48838932  T
Q  220 agagtatttatcttttgatgcttgagtatgtgaatgatttgtgat--------ggaaagtagtagtgtatttatagtcttcaggagtttcttcaaatcca 311  Q
    | ||||||||||||||||||||||||||||||||||| |||||||        || ||  ||| ||| |||||||||||||| ||||||||||||||| |    
T  48838933 a-agtatttatcttttgatgcttgagtatgtgaatgacttgtgatttctgtgagggaa--agttgtgcatttatagtcttcaagagtttcttcaaatcaa 48839029  T
Q  312 tttctttgagaaattaaattattgttaaaggatgggctccatgagatgaggga 364  Q
    ||||||| ||     |||||||| ||||| || ||||||||||||||||||||    
T  48839030 tttctttaag-----aaattattattaaaagacgggctccatgagatgaggga 48839077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 55084844 - 55084682
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| |||||| |||||||||||||||||||||  |||||||| |||||||||||| | || |||||||||||    | ||||| ||||| |    
T  55084844 ttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaagacacccttttggcacattcacagattttgatgatgtt 55084745  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgttt 184  Q
    |||||||   |||| |||| |||||| |||||||| ||||||| |||  |||||| ||||||||    
T  55084744 tggctacccgtaaatgaagtccttctaatagctgcaggtaaacggaa-accatttcaaatgttt 55084682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 38028848 - 38029008
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| ||| |  |||| ||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||   ||  |  | |||||| |    
T  38028848 ttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacat---tcaatacttttgatgtt 38028944  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgttt 184  Q
    |||||||| || || ||||||| ||| |||||||| ||||||| ||| ||||||| ||||||||    
T  38028945 tggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttt 38029008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 50910018 - 50909858
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| |||||  |||| |||||||||  |||||  |||||||| |||||||||||||| |||||||||||||   ||  |  | |||||| |    
T  50910018 ttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttggcacat---tcaatacttttgatgtt 50909922  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgttt 184  Q
    |||||||| ||||| ||||| | ||| |||||||||||||||| ||| ||||||| ||||||||    
T  50909921 tggctactgctaaatgaagctcgtctaatagctgctggtaaacggaaacccatttcaaatgttt 50909858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 38033861 - 38034012
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| ||| |  |||| ||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||||    ||||   |||||| |    
T  38033861 ttggttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttggcacattcaatgctt---ttgatgtt 38033957  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattt 175  Q
    || ||||| || || ||||||| ||| |||||||| ||||||| ||| |||||||    
T  38033958 tgactactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccattt 38034012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 38036875 - 38037026
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| | |||  |||  |||||||| |||||||  ||||||||||||||||||||||| |||||||||||||   ||  |  | | |||| |    
T  38036875 ttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttggcacat---tcaatactttggatgtt 38036971  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattt 175  Q
    |||||||| ||||||||||||| ||| |||||||| ||||||| ||| |||||||    
T  38036972 tggctactgctaaaggaagcccgtctaatagctgcaggtaaacggaaacccattt 38037026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 38024957 - 38025064
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| |||||  |||| ||||||||||||||||  |||||||| || ||||||||||| |||||||| |||||    ||||||| |||||||    
T  38024957 ttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttttgatgatgct 38025056  T
Q  121 tggctact 128  Q
    ||||||||    
T  38025057 tggctact 38025064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 38031409 - 38031516
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| |||||  |||| ||||||||||||||||  |||||||| || ||||||||||| |||||||| |||||    ||||||| |||||||    
T  38031409 ttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttggtacattcacagcttttgatgatgct 38031508  T
Q  121 tggctact 128  Q
    ||||||||    
T  38031509 tggctact 38031516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 38040163 - 38040323
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| ||| |  |||| ||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||   ||  |  | |||||| |    
T  38040163 ttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttggcacat---tcaatacttttgatgtt 38040259  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgttt 184  Q
    |||||||| || || ||||||| ||| |||||||| | |||||  || ||||||| ||||||||    
T  38040260 tggctactgctgaatgaagcccgtctaatagctgcagataaacgaaaacccatttcaaatgttt 38040323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 48840793 - 48840872
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||| | |||  |||| ||||| |||||||| || ||||| ||||||| |||||||||||||||||||||||    
T  48840793 ttggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttggcacat 48840872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 499
Target Start/End: Complemental strand, 38043566 - 38043484
Alignment:
Q  416 tcaataagagtgcatatataataagccccactatttgaaagaaaggccagcagagtacccacttggaagtcaaatgagatggct 499  Q
    |||||||||||||||||||| |||||||| |  | |||| |||||| ||| || ||| | ||||||||||||||||||||||||    
T  38043566 tcaataagagtgcatatatagtaagcccccccttctgaacgaaaggtcagtagggta-cgacttggaagtcaaatgagatggct 38043484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 50911951 - 50912057
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| ||| |  ||||||||||||| ||||| |  |||||||| || || |||||||| ||||||||||||||     |||||| |||||||    
T  50911951 ttggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttggcacattcacaacttttgatgatgct 50912050  T
Q  121 tggctac 127  Q
    |||||||    
T  50912051 tggctac 50912057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 393
Target Start/End: Complemental strand, 38043641 - 38043575
Alignment:
Q  327 aaattattgttaaaggatgggctccatgagatgagggaacacatggtattgtcttttgatgtctctc 393  Q
    |||| |||||| ||| ||||| |||||||||| || || || |||||||||||||| ||||||||||    
T  38043641 aaatgattgttgaagaatgggttccatgagattagagatcatatggtattgtctttggatgtctctc 38043575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 17970360 - 17970022
Alignment:
Q  18 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgat 117  Q
    ||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||   ||||   |||     
T  17970360 agtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgac 17970261  T
Q  118 gcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccatt-----ttaaatgtttcaaacaacagactaaacctctcaaattt 212  Q
    | |||||| || ||||| |   |||||||||||||||| ||||||| ||||||||||     |||||||  ||||| ||||  ||||| ||||| |  ||    
T  17970260 gtttggctgctgctaaatgtcacccttcttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagctctcga--tt 17970163  T
Q  213 aaggaaaagagtatttatcttttgatgcttgagtatgtgaatgatttgtgatg-----gaaagta-gtagtgtatttatagtcttcaggagtttcttcaa 306  Q
    ||| |||| | |||||||||||||||  | |||||||||||||| ||||||||     ||||| | ||||||||||||||||||||| ||||||||||||    
T  17970162 aagaaaaaaaatatttatcttttgattatcgagtatgtgaatgacttgtgatggttgtgaaagaatgtagtgtatttatagtcttcaagagtttcttcaa 17970063  T
Q  307 atccatttctttgagaaattaaattattgttaaaggatgggctcca 352  Q
    ||||||||||||||     ||||||||||||||| |||||||||||    
T  17970062 atccatttctttga-----taaattattgttaaatgatgggctcca 17970022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 100
Target Start/End: Original strand, 27444896 - 27444955
Alignment:
Q  41 ggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  27444896 ggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttggcacat 27444955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 27526192 - 27526273
Alignment:
Q  19 gtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||||| || | | | |||||||||||||||||||  |||||||| |||||||| |||||||||||||| ||||    
T  27526192 gtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttggaacat 27526273  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 27554345 - 27554288
Alignment:
Q  43 atcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||    
T  27554345 atcacaaaccgcttcatttcctctccaacatatactgcaaggtatccctttggcacat 27554288  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 27431230 - 27431310
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatt 101  Q
    |||||||||||| || ||  |||||||||||| ||||||||| || ||||| || ||||||| ||||||||||||||||||    
T  27431230 ttggttcaagtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttggcacatt 27431310  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27469520 - 27469444
Alignment:
Q  19 gtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    ||||| ||||| || || ||| |||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  27469520 gtttgcttcaaatatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27469444  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 27498473 - 27498397
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggca 97  Q
    |||||||||||| || ||| |||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||    
T  27498473 ttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttggca 27498397  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27505782 - 27505861
Alignment:
Q  19 gtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcac 98  Q
    |||||||||||||| || | | | |||||||||||||||||||  ||||| ||||||||||| ||||| |||||||||||    
T  27505782 gtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttggcac 27505861  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 27513856 - 27513935
Alignment:
Q  19 gtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcac 98  Q
    |||||||||||||| || ||  |||||||||||||||||||||  ||||| || |||||||| |||||||| ||||||||    
T  27513856 gtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttggcac 27513935  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 27557547 - 27557468
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||| ||||| |||||  |||||||||||| ||||||||| |||||||| || || |||||||||||| |||||||||    
T  27557547 ttggtttaagtatgacattgggatcacaaacctcttcatttcctctccaacatatacggcaagatatccccttggcacat 27557468  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 27487021 - 27486967
Alignment:
Q  41 ggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    |||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  27487021 ggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttgg 27486967  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27476747 - 27476671
Alignment:
Q  19 gtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    |||||||||||||| || | | | |||||||||||||||||||  || ||||| |||||||| ||||||||||||||    
T  27476747 gtttggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttgg 27476671  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 27500419 - 27500494
Alignment:
Q  20 tttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    ||||||| ||||| || ||| |||||||||| ||||||||||  ||||| ||||||||||| |||||||| |||||    
T  27500419 tttggtttaagtatgatatagggatcacaaatcgcttcattttctctcctacgtacactgctagatatccttttgg 27500494  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 27415679 - 27415603
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||| || ||  |||||||||| |||||   || || |||||| ||||||||||||||||||||||||||||    
T  27415679 ttggttcaagtatgatatggggatcacaaatcgctt---ttgttttccaacatacactgcaagatatccctttggcacat 27415603  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 27523482 - 27523559
Alignment:
Q  18 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    |||||||||||| || || | | | |||||||||||||||||||  ||||| ||||||||||| ||||| ||||||||    
T  27523482 agtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagccctttgg 27523559  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 27507920 - 27507971
Alignment:
Q  46 acaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggca 97  Q
    |||||||||||||||| | |||| |||||||| ||||| |||||||||||||    
T  27507920 acaaaccgcttcatttttactcctacgtacaccgcaaggtatccctttggca 27507971  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 27501355 - 27501301
Alignment:
Q  41 ggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttgg 95  Q
    ||||||||||||| |||||||| |||||||| || ||||| ||| ||||||||||    
T  27501355 ggatcacaaaccgtttcatttcctctccaacatatactgctagacatccctttgg 27501301  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 27563471 - 27563505
Alignment:
Q  64 tctccaacgtacactgcaagatatccctttggcac 98  Q
    ||||||||||||||||||||||| |||||||||||    
T  27563471 tctccaacgtacactgcaagatagccctttggcac 27563505  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 27566076 - 27566110
Alignment:
Q  64 tctccaacgtacactgcaagatatccctttggcac 98  Q
    |||||||| ||||||||||||||||||||||||||    
T  27566076 tctccaacatacactgcaagatatccctttggcac 27566110  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 27414386 - 27414463
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcac 98  Q
    |||||||||||| || | | | |||||||||||  ||||||  ||||||||||| ||||||||||| || ||||||||    
T  27414386 ttggttcaagtatgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagatagccttttggcac 27414463  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 27425870 - 27425793
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcac 98  Q
    |||||||||||| || ||  |||||||| |||||||   ||  |||||||| || |||||||||||||||||||||||    
T  27425870 ttggttcaagtatgatattgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttggcac 27425793  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 27570174 - 27570210
Alignment:
Q  64 tctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||| || |||||||||||||||||||||||||    
T  27570174 tctccaacatatactgcaagatatccctttggcacat 27570210  T

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Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 3073630 - 3073292
Alignment:
Q  18 agtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgat 117  Q
    ||||||||||||||| ||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||   ||||   |||     
T  3073630 agtttggttcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttggcacatttgctactttcaatgac 3073531  T
Q  118 gcttggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccatt-----ttaaatgtttcaaacaacagactaaacctctcaaattt 212  Q
    | |||||| || ||||| |   |||||||||||||||| ||||||| ||||||||||     |||||||  ||||| ||||  ||||| ||||| |  ||    
T  3073530 gtttggctgctgctaaatgtcacccttcttatagctgcaggtaaacggaagcccattctaaattaaatgcgtcaaagaacaagctaaagctctcga--tt 3073433  T
Q  213 aaggaaaagagtatttatcttttgatgcttgagtatgtgaatgatttgtgatg-----gaaagta-gtagtgtatttatagtcttcaggagtttcttcaa 306  Q
    ||| |||| | |||||||||||||||  | |||||||||||||| ||||||||     ||||| | ||||||||||||||||||||| ||||||||||||    
T  3073432 aagaaaaaaaatatttatcttttgattatcgagtatgtgaatgacttgtgatggttgtgaaagaatgtagtgtatttatagtcttcaagagtttcttcaa 3073333  T
Q  307 atccatttctttgagaaattaaattattgttaaaggatgggctcca 352  Q
    ||||||||||||||     ||||||||||||||| |||||||||||    
T  3073332 atccatttctttga-----taaattattgttaaatgatgggctcca 3073292  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 21604836 - 21604996
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgct 120  Q
    |||||||||||| ||| |  |||| ||||| ||||||||||  ||||| || |||||||||||||| |||||||||||||   ||  |  | |||||| |    
T  21604836 ttggttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttggcacat---tcaatacttttgatgtt 21604932  T
Q  121 tggctactactaaaggaagcccttcttatagctgctggtaaacagaagcccattttaaatgttt 184  Q
    |||||||| || || ||||||| ||| |||||||| ||||||| ||| ||||||| ||||||||    
T  21604933 tggctactgctgaatgaagcccgtctaatagctgcaggtaaacggaaacccatttcaaatgttt 21604996  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 21607380 - 21607485
Alignment:
Q  23 ggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacatttgtcgcttttgttgatgcttg 122  Q
    |||||||||| |||||  |||| ||||||||||||||||  |||||||| || || ||||||||||||||||| |||||     |||||| |||||||||    
T  21607380 ggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttggtacattcacaacttttgatgatgcttg 21607479  T
Q  123 gctact 128  Q
    ||||||    
T  21607480 gctact 21607485  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 1754343 - 1754398
Alignment:
Q  41 ggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggc 96  Q
    ||||||||||||||||||||||||||||||| || || || |||||||| ||||||    
T  1754343 ggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttggc 1754398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 1756839 - 1756918
Alignment:
Q  21 ttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttggcacat 100  Q
    |||||||||||| || ||  |||||||||||||||||  ||  |||||||| | |||||||||||| |||||||| ||||    
T  1756839 ttggttcaagtatgatattgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttggtacat 1756918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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