View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_14 (Length: 481)
Name: NF18947_high_14
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Complemental strand, 45349007 - 45348556
Alignment:
| Q |
20 |
acctccacgtccaaatgatcgccatgccttcaatatcttattcttcttacattttccctttatattgcccattaatatatttcaaatcttacacctacat |
119 |
Q |
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| T |
45349007 |
acctccacgtcctaatgatcgccatgccttcaatatcttattcttcttacattttccctttatattgcccattaatatatttcaaatcttacacctacat |
45348908 |
T |
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| Q |
120 |
ttggacacggaaattcattaattagtatagttattctacaatgtgaaatattaaatactacgtgtatatattatagtagtagtaactgataaatattgaa |
219 |
Q |
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| T |
45348907 |
ttggacacggaaattcattcattagtatagttattctacaatgtgaaatattaaatactacgtgtatatattatagtagtagtaactgataaatattgaa |
45348808 |
T |
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| Q |
220 |
cttttttataaaaataaataattgaaaatgcatgggaagcatgcatgaataattgaatac----tatatagtatacctgaaaaattgagttgtgctggct |
315 |
Q |
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| T |
45348807 |
cttttttataaaaataaataattgaaaatgcatgggaagcatgcatgaataattgaatactacttatatagtatacctgaaaaattgagttgtgctggct |
45348708 |
T |
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| Q |
316 |
tttaataaagaaatggaagagagataggtcatctaatgaggtatttctaaagagaatgtaatggatttatacataaaaaatgaaggaaacaacattcttt |
415 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
45348707 |
ttcaataaagaaatggaagagagataggtcatctaatgaggtatttctaaagagaatgtaatggatttatacataaaaaatgaagta---aacattcttt |
45348611 |
T |
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| Q |
416 |
ggtcttcgtctatgggtagtgtcaacgcacaaaaaagtcttctaatttggttcat |
470 |
Q |
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| T |
45348610 |
ggtcttcgtctatgggtagtgtcaacgcacaaaaaagtcttctaatttggttcat |
45348556 |
T |
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