View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_high_15 (Length: 475)

Name: NF18947_high_15
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_high_15
NF18947_high_15
[»] chr5 (3 HSPs)
chr5 (26-475)||(7810363-7810810)
chr5 (23-132)||(23941892-23942001)
chr5 (267-343)||(23941681-23941757)
[»] chr2 (9 HSPs)
chr2 (36-435)||(1026569-1026969)
chr2 (21-244)||(14656819-14657042)
chr2 (270-475)||(35148627-35148832)
chr2 (24-156)||(35138396-35138528)
chr2 (34-148)||(42406402-42406516)
chr2 (24-232)||(174006-174214)
chr2 (283-343)||(22593564-22593624)
chr2 (41-133)||(39009375-39009467)
chr2 (354-435)||(14657152-14657233)
[»] chr3 (9 HSPs)
chr3 (36-435)||(8310854-8311247)
chr3 (20-399)||(11893775-11894154)
chr3 (51-343)||(38650377-38650669)
chr3 (23-127)||(11892838-11892942)
chr3 (24-127)||(53611523-53611626)
chr3 (41-133)||(3662825-3662917)
chr3 (267-331)||(53611766-53611830)
chr3 (34-148)||(15479848-15479962)
chr3 (60-140)||(23421265-23421345)
[»] chr1 (4 HSPs)
chr1 (20-399)||(20281476-20281855)
chr1 (24-474)||(5196219-5196669)
chr1 (298-435)||(50448478-50448615)
chr1 (24-139)||(50448774-50448889)
[»] chr8 (2 HSPs)
chr8 (20-399)||(23135726-23136105)
chr8 (27-247)||(26712226-26712446)
[»] chr7 (2 HSPs)
chr7 (23-127)||(27784698-27784802)
chr7 (36-149)||(16773150-16773263)
[»] scaffold0214 (1 HSPs)
scaffold0214 (51-139)||(5815-5903)
[»] chr4 (2 HSPs)
chr4 (27-130)||(7590880-7590983)
chr4 (36-97)||(46787716-46787777)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 26 - 475
Target Start/End: Complemental strand, 7810810 - 7810363
Alignment:
Q  26 gtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  7810810 gtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaaaccgttatcgttgtccataatt 7810711  T
Q  126 tcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtccttcc 225  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  7810710 tcaaaacctccttgtagtctccatgtctttttcaatcgatctttcattgtgtggtatccaaggtttttccccagcaacttgacaacaatggcgtccttcc 7810611  T
Q  226 atggtgtacagaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaat 325  Q
    |||||||||||| |||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7810610 atggtgtacagagttcttggaaaatactttcttccagatacactttaggtagaagacggtttccattttcatgttcgatacggacaagtttttttccaat 7810511  T
Q  326 catgtcctctttttcacgtattgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttggggtggggggttgttggggatcaggtggc 425  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |  |||| ||||||||||| |||| |    
T  7810510 catgtcctctttttcacgtattgggatttcttgagagggtcctaggagcttatcacgaaaagaaatctttgggtt--ggggctgttggggatcgggtgac 7810413  T
Q  426 tttttggtggtttcaagattttggttactttgagcggagaagacaaactc 475  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7810412 tttttagtggtttcaagattttggttactttgagcggagaagacaaactc 7810363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 23942001 - 23941892
Alignment:
Q  23 gcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccata 122  Q
    ||||||||| || || | ||| |||||||||||||||||||| ||||| || |||||||| || ||||| ||||||||||| || || ||||||||||||    
T  23942001 gcagtgatcgaatatcatccatggccccccagtgatgactttctctttatcagcagcttggtcaaatttaaccatgtaaaagccattgtcgttatccata 23941902  T
Q  123 atttcaaaac 132  Q
    ||||| ||||    
T  23941901 atttcgaaac 23941892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 23941757 - 23941681
Alignment:
Q  267 actttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctctttttcacg 343  Q
    ||||| || ||||| ||||||||||||||||| ||||| |||||||| || |||  ||||||||| | |||||||||    
T  23941757 actttgggaagaagccggtttccattttcatgctcgatgcggacaagtttcttttgaatcatgtcatgtttttcacg 23941681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 36 - 435
Target Start/End: Complemental strand, 1026969 - 1026569
Alignment:
Q  36 attaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctc 135  Q
    ||||||||||| || || |||||||| ||||||||||||||||||| ||||||||||||||| || || |||||||| || ||||| |||||||||||||    
T  1026969 attaaccaagggcctccggtgatgaccttttctttgtctgcagcttcatcgaatttcaccatatagaatccgttatcattgtccatgatttcaaaacctc 1026870  T
Q  136 cttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaacta-tggcgtccttccatggtgtac 234  Q
    ||||   |||||| || ||||  ||||  ||  |||| | |||||| |||||||||||||| |||| |||||| || | | || ||||||||||  ||||    
T  1026869 cttgggttctccaagttttttgtaatcgttccctcatagcgtggtagccgaggtttttccctagcagcttgacgacaaattgcatccttccatgtcgtac 1026770  T
Q  235 agaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctc 334  Q
    | | || |||||| ||   || ||| | || ||| || ||||||||||| |||||||| ||||||||||||||||||||||||| | | |||||||||||    
T  1026769 atagttgttgaaagattgattgttcgagatgaaccttgggtagaagacgatttccattctcatgttcgatacggacaagcttttgttcgatcatgtcctc 1026670  T
Q  335 tttttcacgtattgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttggggtggggggttgttggggatcaggtggctttttggtg 434  Q
    |||||| || ||| || | ||||| ||||| |||||||| || || || ||||||||||||||||| || || | ||| |||||||| || |||||||||    
T  1026669 tttttctcggattagggtttcttgggaggggcctaggagtttgtcgcggaaagagatctttggggttggaggctattgtggatcaggcggttttttggtg 1026570  T
Q  435 g 435  Q
    |    
T  1026569 g 1026569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 14656819 - 14657042
Alignment:
Q  21 aggcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatcca 120  Q
    |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || ||||    
T  14656819 aggcagtgatcaaagattaaccaagggcctcccgtgatgactttttctttgtctgcagcttgatcaaatttcaccatgtagaaaccgttatcattgtcca 14656918  T
Q  121 taatttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtc 220  Q
    | ||||||||||| |||||| ||||||||||   ||  |  |  ||| |||| |||||||| ||||| ||||||||||||||||||||||| || |||||    
T  14656919 tgatttcaaaacccccttgtggtctccatgttcgttgtagcctttctctcatggtgtggtagccgagatttttccccagcaacttgacaacaatagcgtc 14657018  T
Q  221 cttccatggtgtacagaattcttg 244  Q
    ||||||||| || || ||||||||    
T  14657019 cttccatggcgtgcataattcttg 14657042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 475
Target Start/End: Original strand, 35148627 - 35148832
Alignment:
Q  270 ttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctctttttcacgtattgggatatcttgagagggtccta 369  Q
    ||||||| ||| ||||| ||||| |||||||| || |||| |||||||||  | |||||||| ||||||||||| ||   | | ||||| || ||||| |    
T  35148627 ttaggtaaaagtcggttaccattctcatgttcaatgcggaaaagctttttctcgatcatgtcttctttttcacgaataaaggtttcttgtgaaggtccaa 35148726  T
Q  370 ggagcttatcacgaaaagagatctttggggtggggggttgttggggatcaggtggctttttggtggtttcaagattttggttactttgagcggagaagac 469  Q
    |||| |||||||||||||| ||||||||||  ||  || | | ||| ||||||||||||||||||| || ||| || |||| || |||||| ||||| ||    
T  35148727 ggagtttatcacgaaaagaaatctttggggaaggatgtggcttggggtcaggtggctttttggtggcttgaaggttgtggtcaccttgagcagagaaaac 35148826  T
Q  470 aaactc 475  Q
    ||||||    
T  35148827 aaactc 35148832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 35138396 - 35138528
Alignment:
Q  24 cagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataa 123  Q
    ||||||||||| |||||||| || || ||||| |||||||||||||| || || |||| ||| |||||||||||| ||||||| || ||||| ||||| |    
T  35138396 cagtgatcaaagattaaccacgggcctccagttatgactttttctttatccgctgcttcatcaaatttcaccatgaaaaacccattgtcgttgtccatga 35138495  T
Q  124 tttcaaaacctccttgtagtctccatgtctttt 156  Q
    |||| || ||||||||  |||||||||| ||||    
T  35138496 tttcgaaccctccttggggtctccatgtttttt 35138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 42406402 - 42406516
Alignment:
Q  34 aaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacc 133  Q
    ||||||||||||| || || || |  |||||||| |||||||| ||||| || || |||||||| ||||||||||||||||||||||| ||||| |||||    
T  42406402 aaattaaccaaggacctcccgtaacaactttttccttgtctgctgcttggtcaaacttcaccatataaaacccgttatcgttatccatgatttcgaaacc 42406501  T
Q  134 tccttgtagtctcca 148  Q
    |||||| ||| ||||    
T  42406502 tccttggagtttcca 42406516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 174214 - 174006
Alignment:
Q  24 cagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataa 123  Q
    ||||| ||||| |||| |||||| ||||||||||| ||||| || || ||||| |||||||| ||||| |||||  | ||||||||||| || ||||| |    
T  174214 cagtggtcaaagattagccaaggtcccccagtgataactttctccttatctgcggcttgatcaaattttaccataaagaacccgttatcattgtccatga 174115  T
Q  124 tttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtcctt 223  Q
    | || || |||||||| ||| ||||  ||||||  |  | ||| |||||||||| ||| |||||  ||||||| ||||| || || || |  ||||||||    
T  174114 tgtcgaatcctccttggagtttccaaatcttttggagacgatccttcattgtgttgtaaccgagacttttccctagcaatttcacgaccaaagcgtcctt 174015  T
Q  224 ccatggtgt 232  Q
    ||| |||||    
T  174014 ccaaggtgt 174006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 22593624 - 22593564
Alignment:
Q  283 ggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctctttttcacg 343  Q
    |||||||||||||||||||||| || |||||||||||  |||||||||| | |||||||||    
T  22593624 ggtttccattttcatgttcgatgcgaacaagctttttctcaatcatgtcttgtttttcacg 22593564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 39009467 - 39009375
Alignment:
Q  41 ccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacc 133  Q
    |||||| || || ||||||||||| || || |||||  ||||||||||||| ||||| ||||| || || || |||||||| |||||||||||    
T  39009467 ccaaggtcctccggtgatgactttctccttatctgcttcttgatcgaatttgaccatataaaagccattgtcattatccatgatttcaaaacc 39009375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 435
Target Start/End: Original strand, 14657152 - 14657233
Alignment:
Q  354 tcttgagagggtcctaggagcttatcacgaaaagagatctttgggg-tggggggttgttggggatcaggtggctttttggtgg 435  Q
    |||||||||||||||||||| || ||||| ||| |||||||||||| ||| || ||| || ||||| ||||| ||||||||||    
T  14657152 tcttgagagggtcctaggagtttgtcacggaaaaagatctttggggatggtggcttg-tgtggatcgggtggttttttggtgg 14657233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 36 - 435
Target Start/End: Original strand, 8310854 - 8311247
Alignment:
Q  36 attaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctc 135  Q
    |||||| |||| || || |||||||  |||||||||| |||||||| ||||||||||||||| || || ||||||| ||| ||||| |||||||||||||    
T  8310854 attaactaagggcctccggtgatgatcttttctttgtatgcagcttcatcgaatttcaccatatagaatccgttattgttgtccatgatttcaaaacctc 8310953  T
Q  136 cttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtccttccatggtgtaca 235  Q
    | ||   |||||| || ||||  ||||  ||  ||||||||||||| | |||||||||||| |||| |||||| || || || |||||||||||||||||    
T  8310954 cctgggttctccaagttttttgtaatcgctccctcattgtgtggtagctgaggtttttccctagcagcttgacgacaattgcatccttccatggtgtaca 8311053  T
Q  236 gaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctct 335  Q
     | || |||||| |    || ||| | || ||| || |||||||||||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||    
T  8311054 aagttgttgaaagactgattgttcgagatgaaccttgggtagaagacggtttccattctcatgttcgatacagacaagctttttttcgatcatgtcctct 8311153  T
Q  336 ttttcacgtattgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttggggtggggggttgttggggatcaggtggctttttggtgg 435  Q
    ||||| || ||| || | ||||| ||||| |||      || ||||| ||||||||||||||||| || || ||||| |||||||| || ||||||||||    
T  8311154 ttttctcggattagggtttcttgggaggggcct------ttgtcacggaaagagatctttggggttggaggctgttgtggatcaggcggttttttggtgg 8311247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 11894154 - 11893775
Alignment:
Q  20 aaggcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatcc 119  Q
    ||||||||||||||| ||||||||||| || || ||||||||||| ||||||| ||| |||||||| |||||||||||||| || ||||||| ||| |||    
T  11894154 aaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgtatgccgcttgatcaaatttcaccatgtagaaaccgttatagttgtcc 11894055  T
Q  120 ataatttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgt 219  Q
    || ||||| ||||| |||||| || |||||||   ||  |  |  |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||    
T  11894054 atgatttcgaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgaggtttttccccagcaacttgacaacaatagcgt 11893955  T
Q  220 ccttccatggtgtacagaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttt 319  Q
    |||||||||| || || |||| ||| || |    |  ||| |  ||||||||||| || || ||||| ||||| |||||||| || || ||||| |||||    
T  11893954 ccttccatggcgtgcataattattggaagacagatggttcaaggtaaactttaggaaggagtcggttaccattctcatgttcaatgcgaacaagattttt 11893855  T
Q  320 tccaatcatgtcctctttttcacgt---attgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttgggg 399  Q
      | |||||||| || |||||||||   |||||    |||||||| ||||||||||| || || || ||||||||||||||||    
T  11893854 ctcgatcatgtcttccttttcacgtagcattgg---ttcttgagatggtcctaggagtttgtctcggaaagagatctttgggg 11893775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 51 - 343
Target Start/End: Original strand, 38650377 - 38650669
Alignment:
Q  51 ccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctccttgtagtctccatg 150  Q
    ||||||||||||||||| || || || ||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||||||||||||||||     
T  38650377 ccagtgatgactttttccttatcagctgcttgatcgaatttcaccatgtagaatccattgtcgttatccatgatttcaaaccctccttgtagtctccata 38650476  T
Q  151 tctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtccttccatggtgtacagaattcttgaaaaat 250  Q
    | ||||  |  |  ||| ||||   || ||| || ||||| || ||||  | ||| || ||||| ||||||||||| || || |||| |||||||||||     
T  38650477 ttttttgaaggcggtctctcatgacgttgtaaccaaggttctttcccaatagcttcaccactattgcgtccttccacggggtgcagagttcttgaaaaac 38650576  T
Q  251 gctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtcctctttttcacg 343  Q
      ||  ||||||||||||||| || |||||||||||  ||| |||  ||||||||||||| || | ||||  |||||| ||||||||||||||    
T  38650577 ctttggttccaaataaactttgggaagaagacggttgtcatcttcgagttcgatacggacgagttgtttttgaatcatatcctctttttcacg 38650669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 11892838 - 11892942
Alignment:
Q  23 gcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccata 122  Q
    ||||||||| || |||||||||||||| ||| |||||| |||||| || ||  | |||||||| ||||| ||||||||||| |||||||| || |||||     
T  11892838 gcagtgatcgaagattaaccaaggccctccactgatgattttttccttatcaactgcttgatcaaattttaccatgtaaaatccgttatcattgtccatg 11892937  T
Q  123 atttc 127  Q
    |||||    
T  11892938 atttc 11892942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 53611523 - 53611626
Alignment:
Q  24 cagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataa 123  Q
    |||||||| || || | ||| ||||| || ||||||| ||||||||| |||||||||||||| ||||| |||||||| || || || ||||| |||||||    
T  53611523 cagtgatcgaatatcatccatggcccaccggtgatgattttttctttatctgcagcttgatcaaatttaaccatgtagaagccattgtcgttgtccataa 53611622  T
Q  124 tttc 127  Q
    ||||    
T  53611623 tttc 53611626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 3662825 - 3662917
Alignment:
Q  41 ccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacc 133  Q
    |||||| || || ||||||||||| || || |||||  ||||||||||||| ||||| ||||| || || || |||||||| |||||||||||    
T  3662825 ccaaggtcctccggtgatgactttctccttatctgcttcttgatcgaatttgaccatataaaagccattgtcattatccatgatttcaaaacc 3662917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 53611766 - 53611830
Alignment:
Q  267 actttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttccaatcatgtc 331  Q
    ||||| || ||||||||||||||||||||||| || || |||||||| |||||  ||||||||||    
T  53611766 actttgggaagaagacggtttccattttcatgctcaatgcggacaagttttttctcaatcatgtc 53611830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 15479848 - 15479962
Alignment:
Q  34 aaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacc 133  Q
    ||||||||||||| || || || |  ||||| ||||||||||| |||||||| || |||||||| || ||  | || ||||||||||| ||||| || ||    
T  15479848 aaattaaccaaggacctcccgtaacaactttctctttgtctgctgcttgatcaaacttcaccatatagaagtcattgtcgttatccatgatttcgaatcc 15479947  T
Q  134 tccttgtagtctcca 148  Q
    |||||| ||| ||||    
T  15479948 tccttggagtttcca 15479962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 23421345 - 23421265
Alignment:
Q  60 actttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctccttgt 140  Q
    |||||||||||||| ||| |   ||| || |||||||| || || ||||||||||||||||| ||||| || |||||||||    
T  23421345 actttttctttgtcagcaaccaaatcaaacttcaccatatagaaaccgttatcgttatccatgatttcgaaccctccttgt 23421265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 20281855 - 20281476
Alignment:
Q  20 aaggcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatcc 119  Q
    ||||||||||||||| ||||||||||| || || ||||||||||| ||||||| ||| |||||||| |||||||||||||| || ||||||||||| |||    
T  20281855 aaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgtttgccgcttgatcaaatttcaccatgtagaaaccgttatcgttgtcc 20281756  T
Q  120 ataatttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgt 219  Q
    || ||||| ||||| |||||| || |||||||   ||  |  |  |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||    
T  20281755 atgatttcgaaacccccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgaggtttttccccagcaacttgacaacaatagcgt 20281656  T
Q  220 ccttccatggtgtacagaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttt 319  Q
    |||||||||| || || |||||||| || |    |  ||| |  ||||||||||| || || ||||| ||||| |||||||| || || ||||| |||||    
T  20281655 ccttccatggcgtgcataattcttggaagacagatggttcaaggtaaactttaggaaggagtcggttaccattctcatgttcaatgcgaacaagattttt 20281556  T
Q  320 tccaatcatgtcctctttttcacgt---attgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttgggg 399  Q
      | |||||||| || |||||||||   |||||    |||||||| ||||||||||| || || || ||||||||||||||||    
T  20281555 ctcgatcatgtcttccttttcacgtagcattgg---ttcttgagatggtcctaggagtttgtctcggaaagagatctttgggg 20281476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 474
Target Start/End: Original strand, 5196219 - 5196669
Alignment:
Q  24 cagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataa 123  Q
    ||||||| |||||| |||||||| || ||||| ||||||||||| || || || |||||||| ||||||||||| || || ||||| | ||||||||| |    
T  5196219 cagtgataaaaaatcaaccaaggaccaccagtaatgactttttccttatcagctgcttgatcaaatttcaccatatagaaaccgttgttgttatccatga 5196318  T
Q  124 tttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtcctt 223  Q
    | ||||| |||||||| ||||||||  | ||||  | ||  ||| |||| |||| ||| ||||| || || ||||  | |||||||||||| || || ||    
T  5196319 tatcaaaccctccttggagtctccaaattttttgaagtcggtctctcatggtgttgtagccgagattctttcccaatagcttgacaactattgcatcttt 5196418  T
Q  224 ccatggtgtacagaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttttcca 323  Q
    ||||||||| |||| ||||||||| |   ||  |||||| ||||||||  | || || || || ||||   || | |||||||| ||||| || ||| ||    
T  5196419 ccatggtgtgcagagttcttgaaagacttttggttccaagtaaactttgtgcagtaggcgattaccatccccaagctcgatacgtacaagtttcttttca 5196518  T
Q  324 atcatgtcctctttttcacgtattgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttggggtggggggttgttggggatcaggtg 423  Q
    |||||||||||| ||||||| ||| |||| ||||| ||||||| |   || ||||||||||| || | ||| ||||| |  || |  ||| | || ||||    
T  5196519 atcatgtcctctctttcacggatttggatttcttgggagggtcttcaaagtttatcacgaaatgaaagcttaggggttgaaggcttatggaggtcgggtg 5196618  T
Q  424 gctttttggtggtttcaagattttggttactttgagcggagaagacaaact 474  Q
    | |||||||||||||  || ||  | | |||||||||||||||||||||||    
T  5196619 gttttttggtggtttgcaggttgagatcactttgagcggagaagacaaact 5196669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 435
Target Start/End: Complemental strand, 50448615 - 50448478
Alignment:
Q  298 gttcgatacggacaagcttttttccaatcatgtcctctttttcacgtattgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttgg 397  Q
    |||| ||||||||||| || ||  | ||||||||||||||| ||||  || |||| |||||||||||||| | ||| || ||||| ||||||||||||||    
T  50448615 gttcaatacggacaaggttcttctcgatcatgtcctcttttgcacgagtttggatttcttgagagggtcccaagagtttgtcacggaaagagatctttgg 50448516  T
Q  398 gg-tggggggttgttggggatcaggtggctttttggtgg 435  Q
    || ||||||| || ||||| |||||||||||||||||||    
T  50448515 ggttgggggggtg-tgggggtcaggtggctttttggtgg 50448478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 50448889 - 50448774
Alignment:
Q  24 cagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataa 123  Q
    |||||||||||||| | |||||| || || || || |||||||| |||||||| ||    || ||||||||||||||||| || || ||||| ||||| |    
T  50448889 cagtgatcaaaaataagccaaggaccacctgttataactttttccttgtctgctgccaagtcaaatttcaccatgtaaaatccattgtcgttgtccatga 50448790  T
Q  124 tttcaaaacctccttg 139  Q
    ||||||| ||||||||    
T  50448789 tttcaaaccctccttg 50448774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 23135726 - 23136105
Alignment:
Q  20 aaggcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatcc 119  Q
    ||||||||||||||| ||||||||||| || || ||||||||||| ||||||| ||| |||||||| |||||||||||||| || ||||||| ||| |||    
T  23135726 aaggcagtgatcaaatattaaccaaggacctcccgtgatgactttctctttgtttgccgcttgatcaaatttcaccatgtagaaaccgttattgttgtcc 23135825  T
Q  120 ataatttcaaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgt 219  Q
    || ||||| ||||  |||||| || |||||||   ||  |  |  |||||||| || ||||| ||||||||||||||||||||||||||||| || ||||    
T  23135826 atgatttcgaaactcccttgtggtttccatgttcgttgtagcctttctttcatggtatggtagccgaggtttttccccagcaacttgacaacaatagcgt 23135925  T
Q  220 ccttccatggtgtacagaattcttgaaaaatgctttcttccaaataaactttaggtagaagacggtttccattttcatgttcgatacggacaagcttttt 319  Q
    |||||||||| || || |||| ||| || |    |  ||| |  ||||||||||| || || ||||| ||||| |||||||| || || ||||| |||||    
T  23135926 ccttccatggcgtgcataatttttggaagacagatggttcaaggtaaactttaggaaggagtcggttaccattctcatgttcaatgcgaacaagattttt 23136025  T
Q  320 tccaatcatgtcctctttttcacgt---attgggatatcttgagagggtcctaggagcttatcacgaaaagagatctttgggg 399  Q
      | |||||||| || |||||||||   |||||    |||||||| ||||||||||| || || || ||||||||||||||||    
T  23136026 ctcgatcatgtcttccttttcacgtagcattgg---ttcttgagatggtcctaggagtttgtctcggaaagagatctttgggg 23136105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 26712226 - 26712446
Alignment:
Q  27 tgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataattt 126  Q
    ||||||||||| | ||| || || || |||| |||||| |||||||||||  ||||||| ||||| |||||||| || || || || |||||||||||||    
T  26712226 tgatcaaaaatcatccagggaccgccggtgacgactttctctttgtctgcttcttgatcaaatttgaccatgtagaagccattgtcattatccataattt 26712325  T
Q  127 caaaacctccttgtagtctccatgtctttttcaatcaatctttcattgtgtggtatccgaggtttttccccagcaacttgacaactatggcgtccttcca 226  Q
    |||| || | ||||||  ||||  |  |||  |  |  |||||||| |||| |||||||||| | ||||| ||||| |||||| | |  || || |||||    
T  26712326 caaagccgctttgtagcttccaaattctttgtagccggtctttcatggtgttgtatccgagggtcttccctagcaatttgacagccaaagcatctttcca 26712425  T
Q  227 tggtgtacagaattcttgaaa 247  Q
    |||||| || |||||||||||    
T  26712426 tggtgtgcacaattcttgaaa 26712446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 27784698 - 27784802
Alignment:
Q  23 gcagtgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccata 122  Q
    ||||||||| || |||||||||||||| |||||||||| |||||| || || || ||||||||  |||| ||||||||||| |||||||| || |||||     
T  27784698 gcagtgatcgaagattaaccaaggccctccagtgatgattttttccttatcagccgcttgatcatattttaccatgtaaaatccgttatcattgtccatg 27784797  T
Q  123 atttc 127  Q
    |||||    
T  27784798 atttc 27784802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 16773150 - 16773263
Alignment:
Q  36 attaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctc 135  Q
    |||||||| || || ||||| |||| |||||| || || || |||||||| |  || |||||||| || || || |||||||||||||| ||||| || |    
T  16773150 attaaccacgggccaccagtaatgattttttccttatcagcggcttgatcaagctttaccatgtagaaacctttgtcgttatccataatgtcaaagccac 16773249  T
Q  136 cttgtagtctccat 149  Q
    |||||||| |||||    
T  16773250 cttgtagtttccat 16773263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 5903 - 5815
Alignment:
Q  51 ccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataatttcaaaacctccttg 139  Q
    |||| |||||||||||| ||||| | || |||||| ||||||||||| || || || ||||| |||||||||||||| |||||||||||    
T  5903 ccagagatgactttttccttgtcaggagattgatcaaatttcaccatatagaagccattatcattatccataatttcgaaacctccttg 5815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 7590880 - 7590983
Alignment:
Q  27 tgatcaaaaattaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccatgtaaaacccgttatcgttatccataattt 126  Q
    ||||||||||| | ||| || || || |||| |||||| |||||||||||  ||||||| ||||| |||||||| || || ||||| |||||||||||||    
T  7590880 tgatcaaaaatcatccagggaccgccggtgacgactttctctttgtctgcttcttgatcaaattttaccatgtagaagccattatcattatccataattt 7590979  T
Q  127 caaa 130  Q
    ||||    
T  7590980 caaa 7590983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 46787716 - 46787777
Alignment:
Q  36 attaaccaaggccccccagtgatgactttttctttgtctgcagcttgatcgaatttcaccat 97  Q
    |||| ||||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||    
T  46787716 attagccaaggccctccagtgatgactttctccttgtccgcagcttggtcgaatttcaccat 46787777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University