View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_16 (Length: 474)
Name: NF18947_high_16
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 42755945 - 42756407
Alignment:
| Q |
1 |
ttaagaaccgatgaacaatgtcattgttcttcaaaaaataatctcccaaaatcctggagggaaagtact--attagaggggaagatttttgatgagagga |
98 |
Q |
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| T |
42755945 |
ttaagaaccaatgaacaatgtcattgttcttcaaacaataatctcccaaaatcctggagtgaaagtactttattagagggtaagatttttgatgagagga |
42756044 |
T |
|
| Q |
99 |
ccaaattggttgatgtgaatataatttaaggannnnnnnaatcgattttaatagtgtaatgactaaattgaataaacagtgatagtttacaaattaaatt |
198 |
Q |
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| T |
42756045 |
ccaaattggttgatgagaatataatttaaggatttttttaatcgattctaatagtgtaatgactaaattgaataaacagtgacagtttacaaattaaatt |
42756144 |
T |
|
| Q |
199 |
tcttgtttactcaatttttaatagatataacaccacgcatgtcttatgcgatgctctcgtttgttccaggtcgatttcaatcactttaaagtgcataagg |
298 |
Q |
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| T |
42756145 |
tcttgtttactcaatttttaatagatataacaccacgcatgtcttatgcgatgctctcgtctgttccaggtcgatttcaatcactttaaagtgcataagg |
42756244 |
T |
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| Q |
299 |
cgcaaaaggtaaggagcttaaatccatgacatcaattttacacaagaataagaagaattcgatagtactaaactgtcatgaccataggcatatacttata |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42756245 |
cgcaaaaggtaaggagcttaaatccatgacatcaattttacacaagaataagaagaattcgatagtactaaactgtcatgaccataggcatgtacttata |
42756344 |
T |
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| Q |
399 |
tgcttattgattatgggcagataatataaattagtgttggtaagga--tgtcactgccaaatg |
459 |
Q |
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| T |
42756345 |
tgcttattgattatgggcagataatataaattagtgttggtaaggatgtgtcactgccaaatg |
42756407 |
T |
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