View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_20 (Length: 440)
Name: NF18947_high_20
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 37425251 - 37425664
Alignment:
| Q |
6 |
aaaaagaaggaaaactgatttcagtcataacaaacacaaggtttcaaaaacttcaaaaacaattttaacacgctggaaaaacaagaatgtcatcaagctt |
105 |
Q |
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| T |
37425251 |
aaaaagaaggaaaactgatttcagtcataacaaacacaaggtttcaaaaat---------aattttaacactctggaaaaacaagaatgccatcaagctt |
37425341 |
T |
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| Q |
106 |
gttataaaggagcaacataattaatcacaaactcactatctagaatccggcttgaatatgcatatttgaatnnnnnnncctgaattgaatccaaaacaac |
205 |
Q |
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| T |
37425342 |
gttataaaggcgcaacataattaatcacaaactcactatctagaatccggcttgaatatgcatatttgaataaaaaaacctgaattgaatccaaaacaac |
37425441 |
T |
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| Q |
206 |
caagaaagagaacacatgttcattaatatgattacaagagctgccgaacattaaattttgccgccaaagccttcaactttgttgtcatgaattatgaata |
305 |
Q |
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| T |
37425442 |
caagaaagagaacacatgttcattaatatgattacaagagctgccaaacattaaattttgccgccaaagccttcaactttgttgtcatgaattatgaata |
37425541 |
T |
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| Q |
306 |
gaaaaccaagctctaaacttggaaataagatccctcaacttattgcatactatttgtagcgcaatttttcaagtaaaataaatggatacaaatttgnnnn |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37425542 |
gaaaaccaagctctaaacttggaaataagatccctcaacttattgcatactatttgtagcgcaatttttcaagtaaaataaatggatacaaatttgaaaa |
37425641 |
T |
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| Q |
406 |
nnngaagatgattctggtttttc |
428 |
Q |
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| T |
37425642 |
aaagaagatgattctggtttttc |
37425664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 660003 - 660049
Alignment:
| Q |
54 |
aacttcaaaaacaattttaacacgctggaaaaacaagaatgtcatca |
100 |
Q |
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| T |
660003 |
aacttcaaaaacaattttaacaccatggaataacaacaatgtcatca |
660049 |
T |
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