View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_25 (Length: 420)
Name: NF18947_high_25
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 244 - 405
Target Start/End: Complemental strand, 36754314 - 36754152
Alignment:
| Q |
244 |
ttgagatattatagtcttcgtaattgtacatacatgagatccttatttgcataaaaaa-gtttcaccagtgaatttaattgagtgtggtcaacttctacc |
342 |
Q |
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| T |
36754314 |
ttgagatattatagtcttcgtaattgtacatacatcagatccttatttgcataaaaaaagtttcaccagtgaatttaattgagtgtggtcaacttctacc |
36754215 |
T |
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| Q |
343 |
ttgagtatcaagttccctcgtcgtgatttttagaagctccaatgtgtagcttgtgacgttttt |
405 |
Q |
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| T |
36754214 |
ttgagtatcaagttccctcatcatgatttttagaagctccaatgtgtagcttgtgacgttttt |
36754152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 12434240 - 12434203
Alignment:
| Q |
75 |
taattgtcttaaaagttatacattcaactttattcaac |
112 |
Q |
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| T |
12434240 |
taattgtcttaaaagttgtgcattcaactttattcaac |
12434203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 44498301 - 44498338
Alignment:
| Q |
75 |
taattgtcttaaaagttatacattcaactttattcaac |
112 |
Q |
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| T |
44498301 |
taattgtcttaaaagttgtgcattcaactttattcaac |
44498338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 25059222 - 25059258
Alignment:
| Q |
76 |
aattgtcttaaaagttatacattcaactttattcaac |
112 |
Q |
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| T |
25059222 |
aattgtctcaaaagttgtacattcaactttattcaac |
25059258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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