View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_high_26 (Length: 395)

Name: NF18947_high_26
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_high_26
NF18947_high_26
[»] chr8 (9 HSPs)
chr8 (117-375)||(25668786-25669044)
chr8 (117-306)||(25827214-25827401)
chr8 (301-375)||(25471672-25471747)
chr8 (117-197)||(25471480-25471562)
chr8 (302-375)||(25827438-25827512)
chr8 (13-41)||(25471357-25471385)
chr8 (266-306)||(25471596-25471636)
chr8 (13-41)||(25668669-25668697)
chr8 (13-41)||(25827090-25827118)
[»] chr3 (1 HSPs)
chr3 (148-185)||(42626166-42626203)


Alignment Details
Target: chr8 (Bit Score: 183; Significance: 7e-99; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 117 - 375
Target Start/End: Original strand, 25668786 - 25669044
Alignment:
Q  117 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcattttattaaaaataagagtataaatacnnnnnnnngaatatcaaaa 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||    
T  25668786 tttaattgattcaattacttgaattcattatttgaaagaaagatgcgtatagcatttcattaaaaataagagtataaatacagaaaaa-gaatatcaaaa 25668884  T
Q  217 caaattatgggactctcatgataatgaggtcaccctagcaagggcctgagcaactgcatttgtttgtcgtcaattaaactccacctgagatgatattgcc 316  Q
     |||| |||||| | |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  25668885 taaatgatgggattgtcatgataatgaggtcgccctagcaagggtctgagcaactgtatttgtttgtcgtcaattaaactccacttgagatgatattgcc 25668984  T
Q  317 aaactttgtagca-ttgcatgcctactataatactatggaaggcatctatcattttggaa 375  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25668985 aaactttgtagcatttgcatgcctactataatactatggaaggcatctatcattttggaa 25669044  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 117 - 306
Target Start/End: Original strand, 25827214 - 25827401
Alignment:
Q  117 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcattttattaaaaataagagtataaatacnnnnnnnngaatatcaaaa 216  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| |||||||||         ||||||||||    
T  25827214 tttaattgattcaattacttgatttaattatttgaaagaaagatgcttatagcatttcattaaaaataagaatataaatacaaaaaga--aatatcaaaa 25827311  T
Q  217 caaattatgggactctcatgataatgaggtcaccctagcaagggcctgagcaactgcatttgtttgtcgtcaattaaactccacctgaga 306  Q
     |||| |||||||| ||||||||||||| || ||||| ||||||||| ||||||| | |||||||||| || |||||||| |||||||||    
T  25827312 taaatgatgggactgtcatgataatgagatcgccctaacaagggcctaagcaactacgtttgtttgtcatctattaaacttcacctgaga 25827401  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 25471672 - 25471747
Alignment:
Q  301 ctgagatgatattgccaaactttgtagcat-tgcatgcctactataatactatggaaggcatctatcattttggaa 375  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||    
T  25471672 ctgagatgatattgccaaacttcgtagcatctgcatgcctactatcatactatggaaggcatctaccattttggaa 25471747  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 25471480 - 25471562
Alignment:
Q  117 tttaattgattcaattacttgatttcattatttgaaagaaagatgcgtatagcat---tttattaaaaataagagtataaatac 197  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||   || |||||||||||||||||||||||    
T  25471480 tttaattgattcaattacttgatttaattatttgaaagaaa-atgcttatagcatttattaattaaaaataagagtataaatac 25471562  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 25827438 - 25827512
Alignment:
Q  302 tgagatgatattgccaaactttgtagcat-tgcatgcctactataatactatggaaggcatctatcattttggaa 375  Q
    ||||||||||||||||||||   ||| |  |||||||||||||| ||| ||||||||||||||||||||||||||    
T  25827438 tgagatgatattgccaaactccttagtacatgcatgcctactatcatattatggaaggcatctatcattttggaa 25827512  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 25471357 - 25471385
Alignment:
Q  13 aatataatagatttgattgattatttagt 41  Q
    |||||||||||||||||||||||||||||    
T  25471357 aatataatagatttgattgattatttagt 25471385  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 25471596 - 25471636
Alignment:
Q  266 gcaactgcatttgtttgtcgtcaattaaactccacctgaga 306  Q
    |||||| ||||||||||| ||| ||||||||||||||||||    
T  25471596 gcaactacatttgtttgttgtctattaaactccacctgaga 25471636  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 25668669 - 25668697
Alignment:
Q  13 aatataatagatttgattgattatttagt 41  Q
    |||||||||||||||||||||||||||||    
T  25668669 aatataatagatttgattgattatttagt 25668697  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 25827090 - 25827118
Alignment:
Q  13 aatataatagatttgattgattatttagt 41  Q
    |||||||||||||||||||||||||||||    
T  25827090 aatataatagatttgattgattatttagt 25827118  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 42626203 - 42626166
Alignment:
Q  148 ttgaaagaaagatgcgtatagcattttattaaaaataa 185  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  42626203 ttgaaagaaagatgcttatagcattttattaataataa 42626166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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