View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_3 (Length: 869)
Name: NF18947_high_3
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 491 - 852
Target Start/End: Complemental strand, 44349922 - 44349563
Alignment:
| Q |
491 |
atgcaagtagtattccgtcttgtatatcctcataggtatatgtgttacatcatgtgacacacttaagattttggataaaaatctaaagtcttatttgttg |
590 |
Q |
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| T |
44349922 |
atgcaagtaatattccgtcttgtatatg-----aggtatatgtgttacatcatgtcacacacttaagattttggataaaaatctaaagtcttatttgttt |
44349828 |
T |
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| Q |
591 |
taccgaacaattgactcgttgttactttcgacactcttcgtcttcctctttgtcc--aaaagcattggtcaattgatcatttatacatagtgacaatctt |
688 |
Q |
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| T |
44349827 |
tatcgaacgattgactcgttgttactttcgacactcttcgtcttcctctttgtccttaaaagcattggtcaattgatcatttatacacagtgacaatctt |
44349728 |
T |
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| Q |
689 |
atgactaaat-caacaactttcctgcgaggtctctactcgtaacattgaaccttttgttttgtatgcacagtattggtccttgaaatgactcatctagga |
787 |
Q |
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| T |
44349727 |
atgactaaattcaacaactttcctgcgaggtctctactcgtaacattgaaccttttgttttgtatgcacagtattggtccttgaaatgactcatctagga |
44349628 |
T |
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| Q |
788 |
gtattgttcatgtttgtcaaatggctttaattaatcctgtaattatcaaaaagagaaaccctaaa |
852 |
Q |
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| T |
44349627 |
gtattgttcatgtttgtcaaatggctttaattaatcctgtaattatcaaaaagagaaaccctaaa |
44349563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 127 - 488
Target Start/End: Complemental strand, 44350432 - 44350063
Alignment:
| Q |
127 |
tctatcgattaacaaagaccttgatataagattaatcctatcaaatgtaacccnnnnnnnntagtcctatcaaatgtaacnnnnnnnnn---ttaatcct |
223 |
Q |
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| T |
44350432 |
tctatcaattaacaaagaccttgatataagattaatcctatcaaatgtaacccaaaaaaaatagtcctatcaaatgtaacaaaaaaaaaaaattgatcct |
44350333 |
T |
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| Q |
224 |
atcaatcacttctgcaatattcgccacattcacatttatggct-----ataaaagcatgttatgaattattgataatctcaaaatttaaagttatttggt |
318 |
Q |
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| T |
44350332 |
atcaatcacttctgcaatattcgccacattcacatttatggctgtgttataaaagcatgttatgaattattgataatctcaaaatttaaagttatttggt |
44350233 |
T |
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| Q |
319 |
gaaaataataatgtttaaaattgtggttaattttgttgagtgaattgttaataagttgtgatatcttgtgatatttattaattattaaccactagtgtgc |
418 |
Q |
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| T |
44350232 |
gaaaataataatgtttaaaattgtggttaattttgttgagtgaattgttaataagttgtgatatcttgtgatatttattaattattaaccactagtgtgc |
44350133 |
T |
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| Q |
419 |
gttagttttaattgtgaatgattatcccacgtcaactatgaaataacaaatatttggataatatagtata |
488 |
Q |
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| T |
44350132 |
gttagttttaattgtgaatgattatcccacgtcaactatgaaataacaaatatttggataatatagtata |
44350063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 44350569 - 44350535
Alignment:
| Q |
16 |
aaatccaatacaataattcagttcaaatatctctc |
50 |
Q |
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| T |
44350569 |
aaatccaatacaataactcagttcaaatatctctc |
44350535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 44350518 - 44350485
Alignment:
| Q |
62 |
ctcagttcaaatacatttaatacaagaatgtgga |
95 |
Q |
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| T |
44350518 |
ctcagttcaaatacatttaatacaagaaggtgga |
44350485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 399
Target Start/End: Complemental strand, 28827309 - 28827252
Alignment:
| Q |
342 |
tggttaattttgttgagtgaattgttaataagttgtgatatcttgtgatatttattaa |
399 |
Q |
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|||||||||||||| | ||||| |||||||| |||||| ||||||| ||||| ||||| |
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| T |
28827309 |
tggttaattttgtttaatgaatggttaataacttgtgacatcttgttatattcattaa |
28827252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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