View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_high_30 (Length: 384)

Name: NF18947_high_30
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_high_30
NF18947_high_30
[»] chr6 (37 HSPs)
chr6 (1-361)||(27604336-27604697)
chr6 (6-358)||(26802640-26802988)
chr6 (6-361)||(27592658-27593012)
chr6 (6-361)||(27677257-27677606)
chr6 (6-361)||(27679141-27679495)
chr6 (6-361)||(27706041-27706394)
chr6 (172-360)||(27698297-27698485)
chr6 (209-361)||(27718219-27718371)
chr6 (209-361)||(27610842-27610994)
chr6 (1-361)||(27427244-27427598)
chr6 (139-361)||(26884360-26884580)
chr6 (218-361)||(28786473-28786616)
chr6 (218-361)||(28792594-28792737)
chr6 (218-361)||(26861808-26861951)
chr6 (218-361)||(28781334-28781477)
chr6 (152-361)||(27530983-27531189)
chr6 (1-112)||(28786677-28786788)
chr6 (1-112)||(28792798-28792909)
chr6 (299-361)||(27724775-27724837)
chr6 (1-109)||(28781543-28781651)
chr6 (1-86)||(27698218-27698301)
chr6 (182-324)||(25538772-25538914)
chr6 (38-324)||(26646711-26646992)
chr6 (38-324)||(26752679-26752960)
chr6 (218-346)||(27214630-27214758)
chr6 (218-346)||(27234470-27234598)
chr6 (194-324)||(25579951-25580081)
chr6 (194-324)||(26143097-26143227)
chr6 (309-361)||(31284483-31284535)
chr6 (282-348)||(25506897-25506963)
chr6 (227-324)||(26656221-26656318)
chr6 (227-324)||(26762192-26762289)
chr6 (277-346)||(25071869-25071938)
chr6 (227-324)||(27337923-27338020)
chr6 (227-324)||(27398663-27398760)
chr6 (18-81)||(26143338-26143399)
chr6 (302-346)||(28098302-28098346)
[»] scaffold0349 (2 HSPs)
scaffold0349 (209-361)||(3260-3413)
scaffold0349 (209-361)||(14196-14348)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-361)||(59765-60119)
[»] chr4 (10 HSPs)
chr4 (1-361)||(18073957-18074311)
chr4 (1-318)||(18731132-18731440)
chr4 (1-108)||(18723713-18723819)
chr4 (4-108)||(18655108-18655211)
chr4 (4-108)||(18699031-18699134)
chr4 (1-108)||(18679188-18679301)
chr4 (227-307)||(18655322-18655402)
chr4 (227-307)||(18723930-18724010)
chr4 (227-317)||(18699245-18699335)
chr4 (218-317)||(18679403-18679502)
[»] scaffold0277 (4 HSPs)
scaffold0277 (227-361)||(4529-4663)
scaffold0277 (227-361)||(13490-13624)
scaffold0277 (1-109)||(13307-13415)
scaffold0277 (1-112)||(4344-4457)
[»] scaffold0419 (2 HSPs)
scaffold0419 (227-361)||(7720-7854)
scaffold0419 (1-109)||(7929-8037)
[»] chr1 (5 HSPs)
chr1 (1-112)||(267978-268094)
chr1 (219-357)||(28127516-28127654)
chr1 (219-315)||(28164200-28164296)
chr1 (227-298)||(268202-268273)
chr1 (55-106)||(28164048-28164100)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 37)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 27604336 - 27604697
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgt 99  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  27604336 gtatgtaacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgtttaaaaacgt 27604435  T
Q  100 aaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  27604436 aaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggtaattgaaattgaataaagaaaatacaaaagggaaaaataggatttatg 27604535  T
Q  200 taatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttctta 299  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| | || |    
T  27604536 tagtgttgagtacccaggaggactatcatggtagccggaaaagttagcagcctggctcagagccactttccatcgctgcaacctctttatgttatcctca 27604635  T
Q  300 tcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  27604636 tcattttgaaacctttttttatgctcagccaatgcttgaccgtaactacctttatgatgtcg 27604697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 358
Target Start/End: Complemental strand, 26802988 - 26802640
Alignment:
Q  6 taacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaata 104  Q
    ||||||| |||||||||||||||||||  |||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||| |||    
T  26802988 taacaacatcacaatcacatccatgta--ctcataatatattatacatttctaactatttcaacatataaataactaatacttgtttaaaaacgtatata 26802891  T
Q  105 aaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatg 204  Q
    | ||||||||||   | ||||||||||| || |||||||||||||| ||||||| ||||| ||| |||||| |||||||||||||||||||||||||| |    
T  26802890 agaaaggtattt---cccatttaacctttaagatgagattattgggaaattgaagttgaagaaataaaatataaaagggaaaaataggatttaagtaaag 26802794  T
Q  205 ttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcatt 304  Q
    ||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||    
T  26802793 ttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctccaacctctccatgttatccttatcatt 26802694  T
Q  305 ttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatg 358  Q
    ||||||||| ||||||||||||||||||||||||||||| |||| | |||||||    
T  26802693 ttgaaaccttttttcatgctcagccaatgcttcaccatagctacatgtatgatg 26802640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 27592658 - 27593012
Alignment:
Q  6 taacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---ctttttaaaaac-gtaa 101  Q
    ||||||| |||||||||||||||||||  || ||||| |||||||||||||||||||||  |||||||||||||||||||   ||| || ||||| |||     
T  27592658 taacaacatcacaatcacatccatgta--ctaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27592755  T
Q  102 ataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagta 201  Q
    |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  27592756 ataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagta 27592852  T
Q  202 atgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatc 301  Q
    | |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||  ||||||||| ||||||||||||||||||||||  |||    
T  27592853 aagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcgtctttccatccctgcaacctctccatgtttttcggatc 27592952  T
Q  302 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27592953 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 27593012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 27677257 - 27677606
Alignment:
Q  6 taacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatact--ttttaaaaacgtaaat 103  Q
    ||||||| |||||||||||||||||||  ||   ||| |||||||||||||||||||||  ||||||||||||||||||| |  ||||||||  ||| ||    
T  27677257 taacaacatcacaatcacatccatgta--ct---aatgtattatacatttctaactatttcgacatataaataactaatagtacttttaaaactgtatat 27677351  T
Q  104 aaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaat 203  Q
    |||||||||||||   | | ||||||||| || |||||||||||| | ||||||| ||||| ||| |||||| ||||||||||||||||||||||||||     
T  27677352 aaaaaaggtattt---cccttttaacctttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagtaaa 27677448  T
Q  204 gttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcat 303  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||||||| |||||  |||||    
T  27677449 gttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgcttttcggatcat 27677548  T
Q  304 tttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27677549 tttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcg 27677606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 361
Target Start/End: Complemental strand, 27679495 - 27679141
Alignment:
Q  6 taacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---ctttttaaaaac-gtaa 101  Q
    ||||||| |||||||||||||||||||  || ||||| |||||||||||||||||||||  |||||||||||||||||||   ||| || ||||| |||     
T  27679495 taacaacatcacaatcacatccatgta--ctaagaatgtattatacatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27679398  T
Q  102 ataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagta 201  Q
    |||||||||||||||   | | ||||||||| || ||||||||||||   ||||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  27679397 ataaaaaaggtattt---cccttttaacctttaagatgagattattgtaaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagta 27679301  T
Q  202 atgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatc 301  Q
    | |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||  ||||||||  |||||||||||||||||||||  |||    
T  27679300 aagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccatccttgcaacctctccatgtttttcggatc 27679201  T
Q  302 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27679200 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcg 27679141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 27706041 - 27706394
Alignment:
Q  6 taacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaata---ctttttaaaaac-gtaa 101  Q
    ||||||| || ||||||||||||||||  || ||||| |||||| ||||||||||||||  |||||||||||||||||||   ||| || ||||| |||     
T  27706041 taacaacatcccaatcacatccatgta--ctaagaatgtattattcatttctaactatttcgacatataaataactaatagtacttgtttaaaactgtat 27706138  T
Q  102 ataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagta 201  Q
    |||||||||||||||     | ||||| ||| || |||||||||||| | ||||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  27706139 ataaaaaaggtatttc----cctttaaactttaagatgagattattgtgaaattgaagttgaagaaataaaatagaaaagggaaaaataggatttaagta 27706234  T
Q  202 atgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatc 301  Q
    | |||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||  |||    
T  27706235 aagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatc 27706334  T
Q  302 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27706335 attttgaaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcg 27706394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 27698297 - 27698485
Alignment:
Q  172 aatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttcca 271  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  27698297 aatacaaaagggaaatataggatttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttcca 27698396  T
Q  272 tcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtc 360  Q
    || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  27698397 tccctgcaacctctccatgtttttcggatcattttgaaacctcttttcatgctcagccaatgctttgccataactacctttatgatgtc 27698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 27718219 - 27718371
Alignment:
Q  209 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 308  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27718219 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttattcttatcattttga 27718318  T
Q  309 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27718319 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcg 27718371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 27610842 - 27610994
Alignment:
Q  209 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 308  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  27610842 gtacccaggaggactatcatggtagccggaaaagtttgcagcctggctcagagccactttccatccctgcaacctctccatgttattcttatcattttga 27610941  T
Q  309 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27610942 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcg 27610994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 27427244 - 27427598
Alignment:
Q  1 gtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaac 97  Q
    |||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||    
T  27427244 gtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaac 27427341  T
Q  98 gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 197  Q
     |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||  |||| |||    
T  27427342 ataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac-aggaatta 27427434  T
Q  198 agtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttct 297  Q
    |||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| |||||||||||||||||||||||     
T  27427435 agtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcg 27427534  T
Q  298 tatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||    
T  27427535 tatcattttgaaacctattttcatgctcagccaatgctttaccatacctacctgtatgatgtcg 27427598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 139 - 361
Target Start/End: Complemental strand, 26884580 - 26884360
Alignment:
Q  139 gagattattgggcaatt-gaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccgg 237  Q
    |||||||||||| |||| |||||| || |||||||||| ||||  | |||||| ||||||||||| || |  |||| | ||   |||  |||||||||||    
T  26884580 gagattattggggaatttgaaattaaagaaagaaaatataaaaaaggaaaatatgatttaagtaaagtgggatacccaaga---ctaaaatggtagccgg 26884484  T
Q  238 aaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttc 337  Q
    | ||||||||| | || |||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||||    
T  26884483 acaagttagcaacttgcctcatagccattttccatcgctgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttc 26884384  T
Q  338 accataactacctttatgatgtcg 361  Q
    ||||||||||||| ||||||||||    
T  26884383 accataactacctgtatgatgtcg 26884360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 28786616 - 28786473
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28786517  T
Q  318 tcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||    
T  28786516 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcg 28786473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 28792737 - 28792594
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28792638  T
Q  318 tcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||    
T  28792637 tcatgcccagccaatgcttcaccataacgacctgtatgatgtcg 28792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 26861951 - 26861808
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||  ||||||||| || ||||||||||| ||| ||||||| |||||||||| |||||||||||||||||| | | |||||||||||||||| |||    
T  26861951 aggactaaaatggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttt 26861852  T
Q  318 tcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||    
T  26861851 tcatgcttagccaatgcttcaccataaatacctctatgatgtcg 26861808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 28781477 - 28781334
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||  |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| | ||||||||||||||||||||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttt 28781378  T
Q  318 tcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||  ||||||||||||||||||||  |||| ||||||||||    
T  28781377 tcatgtccagccaatgcttcaccataaggacctgtatgatgtcg 28781334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 152 - 361
Target Start/End: Original strand, 27530983 - 27531189
Alignment:
Q  152 aattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagca 251  Q
    |||||||||| || |||||||||| |||||||||||||||||||||||||| || |  |||| | |     ||| ||| | ||| || |||||||| ||     
T  27530983 aattgaaattaaagaaagaaaatataaaagggaaaaataggatttaagtaaagtgggctacccatgtt---tataatgctggccagacaagttagccgct 27531079  T
Q  252 tggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctt 351  Q
    |||||||||||  |||||||| |||||||||||||  |||| | |||||||||||||||| | |||| |||| |||| |||||||||||||| ||||||     
T  27531080 tggctcagagcttctttccattgctgcaacctctcagtgttatccttatcattttgaaacttttttttatgcacagctaatgcttcaccatatctacctg 27531179  T
Q  352 tatgatgtcg 361  Q
    | ||||||||    
T  27531180 tgtgatgtcg 27531189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28786788 - 28786677
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tttaaaaacg 98  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||| |||||| | ||||||| ||||||||||    
T  28786788 gtatgtaacaacatcacaatcacatccatgta--ctcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacg 28786691  T
Q  99 taaataaaaaaggt 112  Q
    |||||| |||||||    
T  28786690 taaatagaaaaggt 28786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28792909 - 28792798
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tttaaaaacg 98  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||| |||||| | ||||||| ||||||||||    
T  28792909 gtatgtaacaacatcacaatcacatccatgta--ctcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgtttaaaaacg 28792812  T
Q  99 taaataaaaaaggt 112  Q
    |||||| |||||||    
T  28792811 taaatagaaaaggt 28792798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 27724775 - 27724837
Alignment:
Q  299 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27724775 atcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcg 27724837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 28781651 - 28781543
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tttaaaaacg 98  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||| |||||| | |||| || ||||||||||    
T  28781651 gtatgtaacaacatcacaatcacatccatgta--ctcagaatatagtatacatttctaactattttgacataaaaataattaaataattgtttaaaaacg 28781554  T
Q  99 taaataaaaaa 109  Q
    |||||| ||||    
T  28781553 taaatagaaaa 28781543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27698218 - 27698301
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatac 86  Q
    ||||| |||||| ||||||||||||| |||||  |||||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  27698218 gtatgaaacaacatcacaatcacatctatgta--ctcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 324
Target Start/End: Complemental strand, 25538914 - 25538772
Alignment:
Q  182 ggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaac 281  Q
    ||||||| | ||||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  ||||     
T  25538914 ggaaaaacaagatttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaat 25538815  T
Q  282 ctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    | |||||||||||||| || |||||||||||||| ||||||||    
T  25538814 cgctccatgtttttctcattattttgaaacctctcttcatgct 25538772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 26646992 - 26646711
Alignment:
Q  38 agaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctc-atttaaccttgaa 135  Q
    ||||||||||||||| |||||||| || |||||||||||||| | |||||| ||||||||| | ||||||||   ||| || |  | |||||| ||| ||    
T  26646992 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaa---tatgtgtttcctatttaagctttaa 26646896  T
Q  136 tatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagcc 235  Q
     |||||||| ||| | ||   ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||    
T  26646895 gatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatcc 26646800  T
Q  236 ggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||| ||||||||||| ||| |||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26646799 ggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26646711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 324
Target Start/End: Complemental strand, 26752960 - 26752679
Alignment:
Q  38 agaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaaaaaggtatttgatctc-atttaaccttgaa 135  Q
    ||||||||||||||| |||||||| || |||||||||||||| | |||||| ||||||||| | ||||||||   ||| || |  | |||||| ||| ||    
T  26752960 agaatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaa---tatgtgtttcctatttaagctttaa 26752864  T
Q  136 tatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaagtaatgttgagtacctaggaggactatcatggtagcc 235  Q
     |||||||| ||| | ||   ||||| ||||||||||||| |||| ||||||| | | ||||||||| || | ||||| ||||   |||| |||||| ||    
T  26752863 gatgagatt-ttgtggaaaaaaaattaaataaagaaaatataaaaaggaaaaacaaggtttaagtaaagtggggtacccagga---ctataatggtatcc 26752768  T
Q  236 ggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||| ||||||||||| ||| |||||||||  |||||| | ||||| |  ||| |||||||||| | |||||| || |||| ||| ||||    
T  26752767 ggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaactctcttcgtgct 26752679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 27214758 - 27214630
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27214659  T
Q  318 tcatgctcagccaatgcttcaccataact 346  Q
    ||||||| ||| |  ||||||||||||||    
T  27214658 tcatgcttagcaagcgcttcaccataact 27214630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 346
Target Start/End: Original strand, 27234470 - 27234598
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||| ||| ||||| || ||||||||||| ||| | ||||| |  ||||||  |||||||| ||||||||||| ||| | |||||||||||||| |    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctct 27234569  T
Q  318 tcatgctcagccaatgcttcaccataact 346  Q
    ||||||| ||| |  ||||||||||||||    
T  27234570 tcatgcttagcaagcgcttcaccataact 27234598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 25580081 - 25579951
Alignment:
Q  194 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 293  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  294 ttcttatcattttgaaacctcttttcatgct 324  Q
    ||||  | |||||||||||||| ||||||||    
T  25579981 ttctcgttattttgaaacctctcttcatgct 25579951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 26143227 - 26143097
Alignment:
Q  194 tttaagtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgttt 293  Q
    ||||||||| || | ||||| | ||||||||| ||| |||||||| ||||||||||| ||| | ||||| |  |||||| |  |||| | ||||||||||    
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgttt 26143128  T
Q  294 ttcttatcattttgaaacctcttttcatgct 324  Q
    ||||  | |||||||||||||| ||||||||    
T  26143127 ttctcgttattttgaaacctctcttcatgct 26143097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 31284535 - 31284483
Alignment:
Q  309 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||| |||||||| |||||||||||| |||||||||||| ||||||||||    
T  31284535 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgtcg 31284483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 25506897 - 25506963
Alignment:
Q  282 ctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataactac 348  Q
    ||||||||||||||||||| |||||||||| ||| |||||||| || ||   |||||||||||||||    
T  25506897 ctctccatgtttttcttattattttgaaacttctcttcatgcttagtcagatcttcaccataactac 25506963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 26656318 - 26656221
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26656318 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26656221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 26762289 - 26762192
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||||||||| || ||||| ||||| | | |||||||||  |||||| ||| |||||||| |||||||| ||| | |||||| ||| ||||||||||||    
T  26762289 atggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttcatgct 26762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 25071938 - 25071869
Alignment:
Q  277 gcaacctctccatgtttttcttatcattttgaaacctcttttcatgctcagccaatgcttcaccataact 346  Q
    |||||| |||||||| || ||| | ||||||||||| || |||||||| ||| |||| ||||||||||||    
T  25071938 gcaaccgctccatgtgttccttgttattttgaaacccctcttcatgcttagcaaatgattcaccataact 25071869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 27337923 - 27338020
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27338020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 324
Target Start/End: Original strand, 27398663 - 27398760
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgct 324  Q
    ||||| |||||| ||||||||||| ||| | |||||||  ||||||  || ||||||||||||||||| ||| | |||||| ||| | | ||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgct 27398760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 26143399 - 26143338
Alignment:
Q  18 aatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact 81  Q
    |||||||||||||||   | |||||||||||| || |||||||| || ||||||||||||||||    
T  26143399 aatcacatccatgtat--tgagaatatattatgcaattctaacttttttgacatataaataact 26143338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 346
Target Start/End: Original strand, 28098302 - 28098346
Alignment:
Q  302 attttgaaacctcttttcatgctcagccaatgcttcaccataact 346  Q
    |||||| ||||||| |||||||| ||| |||||||||||||||||    
T  28098302 attttggaacctctcttcatgcttagctaatgcttcaccataact 28098346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 3260 - 3413
Alignment:
Q  209 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatg-tttttcttatcattttg 307  Q
    ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||    
T  3260 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttttcggatcattttg 3359  T
Q  308 aaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3360 aaacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcg 3413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 14196 - 14348
Alignment:
Q  209 gtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttga 308  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||    
T  14196 gtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctctttccatccctgcaacctctccatgtttttcggatcattttga 14295  T
Q  309 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14296 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcg 14348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 60119 - 59765
Alignment:
Q  1 gtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaac 97  Q
    |||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||    
T  60119 gtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaac 60022  T
Q  98 gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 197  Q
     |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||  |||| |||    
T  60021 ataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac-aggaatta 59929  T
Q  198 agtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttct 297  Q
    |||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| |||||||||||||||||||||||     
T  59928 agtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcg 59829  T
Q  298 tatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||    
T  59828 tatcattttgaaacctattttcatgctcagccaatgctttaccatacctacctgtatgatgtcg 59765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 18074311 - 18073957
Alignment:
Q  1 gtatgtaacaacgtcaca--atcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaac 97  Q
    |||||||||||| |||||  ||||||||||||||  |||| |||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||    
T  18074311 gtatgtaacaacatcacacaatcacatccatgta--ctcataatatattatacatttttaactattttgacatataaataactaacaattgtttaaaaac 18074214  T
Q  98 gtaaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggattta 197  Q
     |||||||||||||| ||  |   ||||||  ||| || |||    ||||| | ||| |||||| ||||||  |||| ||||| | ||||  |||| |||    
T  18074213 ataaataaaaaaggtgttaca---catttaggctttaagatgg---tattgaggaatagaaattaaataaattaaatgcaaaaagcaaaac-aggaatta 18074121  T
Q  198 agtaatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttct 297  Q
    |||||    | ||||| | ||  |  ||||||||||| ||  |||||||||||  | |||||||||||||||||| |||||||||||||||||||||||     
T  18074120 agtaaataggcgtacccatgactatcatcatggtagctgggcaagttagcagccagactcagagccactttccattgctgcaacctctccatgtttttcg 18074021  T
Q  298 tatcattttgaaacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcg 361  Q
    |||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||    
T  18074020 tatcattttgaaacctattttcatgctcagccaatgctttaccatacctacctgtatgatgtcg 18073957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 18731132 - 18731440
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgt 99  Q
    |||||||||||| ||||| ||||||||||||   |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||| ||    
T  18731132 gtatgtaacaacatcacagtcacatccatgtc--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgt 18731229  T
Q  100 aaataaaaaaggtatttgatctcatttaaccttgaatatgagattattgggcaattgaaattgaataaagaaaatacaaaagggaaaaataggatttaag 199  Q
    ||| ||||||||| ||   ||  |||||  ||| || |||  ||||||| | |||  ||||| |||||| ||||| ||||| || |||| | || |||||    
T  18731230 aaa-aaaaaaggtgtt---tccaatttaggctttaagatggtattattgaggaataaaaattaaataaataaaatgcaaaatgg-aaaacaagaattaag 18731324  T
Q  200 taatgttgagtacctaggaggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttctta 299  Q
    ||| |  |||||||    | |||||  |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| |||||||||||||||     
T  18731325 taaagaggagtacc---catgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttg 18731421  T
Q  300 tcattttgaaacctctttt 318  Q
    | |||||| || |||||||    
T  18731422 ttattttggaaactctttt 18731440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18723713 - 18723819
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgt 99  Q
    |||||||||||| ||||| |||||||||| ||  |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||| ||    
T  18723713 gtatgtaacaacatcacagtcacatccattta--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgt 18723810  T
Q  100 aaataaaaa 108  Q
    |||||||||    
T  18723811 aaataaaaa 18723819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 18655108 - 18655211
Alignment:
Q  4 tgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaa 102  Q
    ||||||||| ||||| |||||||||| ||  |||| ||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||    
T  18655108 tgtaacaacatcacagtcacatccattta--ctcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaa 18655205  T
Q  103 taaaaa 108  Q
    ||||||    
T  18655206 taaaaa 18655211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 18699031 - 18699134
Alignment:
Q  4 tgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaaacgtaaa 102  Q
    ||||||||| ||||| ||||||||||||   |||| | ||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||||     
T  18699031 tgtaacaacatcacagtcacatccatgtc--ctcatagtatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaacgtaat 18699128  T
Q  103 taaaaa 108  Q
    ||||||    
T  18699129 taaaaa 18699134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 18679188 - 18679301
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaa-------ctattgtgacatataaataactaatactt-ttta 92  Q
    |||||||||||| ||||| ||||| |||||||  |||| ||||||| ||||||||||||       ||||| |||| |||||||||||||||||| ||||    
T  18679188 gtatgtaacaacatcacagtcacacccatgta--ctcataatatatcatacatttctaaattcaaactattttgacttataaataactaatacttgttta 18679285  T
Q  93 aaaacgtaaataaaaa 108  Q
    ||||||||||||||||    
T  18679286 aaaacgtaaataaaaa 18679301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 18655322 - 18655402
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 307  Q
    |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18655322 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18655402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 307
Target Start/End: Original strand, 18723930 - 18724010
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttg 307  Q
    |||||||||||| ||||||||||| | | |||||||||  |||||| | ||||||| ||||||||||||||| | ||||||    
T  18723930 atggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttg 18724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 18699245 - 18699335
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| ||||||||||||||| | |||||| || ||||||    
T  18699245 atggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaaactcttt 18699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 18679403 - 18679502
Alignment:
Q  218 aggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttt 317  Q
    |||||||  |||||||||||| ||||||||||| | | ||||||| |  |||||| | ||||||| |||||||||||| || | |||||| || ||||||    
T  18679403 aggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttattgttattttggaaactcttt 18679502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 227 - 361
Target Start/End: Original strand, 4529 - 4663
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 326  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  327 gccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||||||||||||||||||||||  |||||||    
T  4629 gccaatgcttcaccataactacctttcagatgtcg 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 227 - 361
Target Start/End: Original strand, 13490 - 13624
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 326  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||  ||    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  327 gccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||||||||||||||| |||| ||||||||||    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcg 13624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 13307 - 13415
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tttaaaaacg 98  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||| || ||| | ||||||| ||||||||||    
T  13307 gtatgtaacaacatcacaatcacatccatgta--ctcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacg 13404  T
Q  99 taaataaaaaa 109  Q
    |||||| ||||    
T  13405 taaatagaaaa 13415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 4344 - 4457
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatat--tatacatttctaactattgtgacatataaataact-aatactt-tttaaaaa 96  Q
    |||||||||||| ||||||||||||||||||  ||||| |||||||  |||||||||||||||||||||||||| || ||| | ||||||| ||||||||    
T  4344 gtatgtaacaacatcacaatcacatccatgt--actcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtttaaaaa 4441  T
Q  97 cgtaaataaaaaaggt 112  Q
    |||||||| |||||||    
T  4442 cgtaaatataaaaggt 4457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 227 - 361
Target Start/End: Complemental strand, 7854 - 7720
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctcttttcatgctca 326  Q
    |||||||||||| ||||||||||| ||| |||||||||  |||||| | ||||| | ||||||||| |||||||||||||||||||||||||||||  ||    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  327 gccaatgcttcaccataactacctttatgatgtcg 361  Q
    ||||||||||||||||||| |||| ||||||||||    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcg 7720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8037 - 7929
Alignment:
Q  1 gtatgtaacaacgtcacaatcacatccatgtagactcagaatatattatacatttctaactattgtgacatataaataact-aatactt-tttaaaaacg 98  Q
    |||||||||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||| || ||| | ||||||| ||||||||||    
T  8037 gtatgtaacaacatcacaatcacatccatgta--ctcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgtttaaaaacg 7940  T
Q  99 taaataaaaaa 109  Q
    |||||| ||||    
T  7939 taaatagaaaa 7929  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 267978 - 268094
Alignment:
Q  1 gtatgtaacaacgtcaca--atcacatccatgtag--actcagaatatattatacatttctaactattgtgacatataaataactaatactt-tttaaaa 95  Q
    |||||||||||| |||||  |||||||||||| |   ||||| |||||||||||| ||||||||||||  | |||||||| ||||||||||| |||| ||    
T  267978 gtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttagaa 268077  T
Q  96 acgtaaataaaaaaggt 112  Q
    |||||||||||||||||    
T  268078 acgtaaataaaaaaggt 268094  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 357
Target Start/End: Original strand, 28127516 - 28127654
Alignment:
Q  219 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctctttt 318  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| ||||||| |     
T  28127516 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctctc 28127615  T
Q  319 catgctcagccaatgcttcaccataactacctttatgat 357  Q
    |||||| ||| |   ||||||||||||| ||| ||||||    
T  28127616 catgcttagcaagctcttcaccataactccctgtatgat 28127654  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 28164200 - 28164296
Alignment:
Q  219 ggactatcatggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttcttatcattttgaaacctct 315  Q
    ||||||| |||||||||||| ||||||||||| ||| | ||||| |  |||||| | ||||| | ||||||||||||||| | |||||| |||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctct 28164296  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 298
Target Start/End: Original strand, 268202 - 268273
Alignment:
Q  227 atggtagccggaaaagttagcagcatggctcagagccactttccatcgctgcaacctctccatgtttttctt 298  Q
    ||||||||| || ||||||| ||| ||| |||||||||  |||||| | ||||||| |||||||||||||||    
T  268202 atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttttctt 268273  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 28164048 - 28164100
Alignment:
Q  55 tctaactattgtgacatataaataactaatactt-tttaaaaacgtaaataaa 106  Q
    |||||||||| ||||||||||||| || |||||| ||||||||| ||||||||    
T  28164048 tctaactattttgacatataaatatcttatacttgtttaaaaacataaataaa 28164100  T

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