View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_33 (Length: 367)
Name: NF18947_high_33
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 40 - 351
Target Start/End: Complemental strand, 38265950 - 38265639
Alignment:
| Q |
40 |
gcgttgataaaggtcctttctataataaggagttgattccaacaaattaggattatacgaatcaaaaagactactcaaagaatcattatcatataaatta |
139 |
Q |
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| T |
38265950 |
gcgttgataaaggtcctttctataataaggagttgattccaacaaataaggattatacgaatcaaaaagactactcaaagaatcattatcatataaatta |
38265851 |
T |
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| Q |
140 |
atcctctccaagaaattaagagtttgatatgtaaaacgatcaacgacagaaacacccaaatccgaatcaaaatgatgtgaatacgaactctctcctttca |
239 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
38265850 |
atcctctccaagaaattaagagtttgatatgtaaagcgatcaacgacagaaacacccaaatccaaatcagaatgatgtgaatacgaactctctcctttca |
38265751 |
T |
|
| Q |
240 |
aactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagcttgacaagtatccaccattatcaacaactccttaaacctgtg |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38265750 |
cactacttccaatagctaaaacaccaggtgaacgaaggtctgagaaaagagtagcagcttgacaagtatccaccattatcaacaactccttaaacctgtg |
38265651 |
T |
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| Q |
340 |
attctctttcat |
351 |
Q |
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|||||||||||| |
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| T |
38265650 |
attctctttcat |
38265639 |
T |
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