View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_36 (Length: 352)
Name: NF18947_high_36
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 17367527 - 17367217
Alignment:
| Q |
15 |
aagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcatcattgatagctaacaataaa |
114 |
Q |
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| T |
17367527 |
aagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgataaaggtgacccatgtttgtttcatcattgatagctaacaacaaa |
17367428 |
T |
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| Q |
115 |
aatcaacgatagctaataaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagagagcatgtatccaaatattag |
214 |
Q |
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| T |
17367427 |
a----------gctaacaaaataataatgtaaattaaaacacacaactgaacgtggtgaagcagcctattttatgaagagagcatgtatccaaatattag |
17367338 |
T |
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| Q |
215 |
gaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttctattacgtgtttgttttatcat |
314 |
Q |
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| T |
17367337 |
gaatacgaaacacacaactgaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaatattcttctgttacgtgtttgttttatcat |
17367238 |
T |
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| Q |
315 |
cgtaacaaatagcatagctct |
335 |
Q |
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| T |
17367237 |
cgtaacaaatagcatagctct |
17367217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 17361226 - 17361141
Alignment:
| Q |
15 |
aagagtgattttagggttaccatgaaggtgaaaaagagtgatttcaggattctgatgaaggtgacccatgtttgtttcatcattga |
100 |
Q |
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| T |
17361226 |
aagagtgattttagggttatgatgaaggtgaaaaatagtgacttgaggattctgatgaaggtggccaatgtttgtttcatcattga |
17361141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 9494789 - 9494839
Alignment:
| Q |
234 |
gaacatgctgatttccatgcaaatcaaagtttatatttttccatctttaaat |
285 |
Q |
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| T |
9494789 |
gaacatggtgatttccatccag-tcaaagtttatatttttccatctttaaat |
9494839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 3448896 - 3448938
Alignment:
| Q |
246 |
ttccatgcaaatcaaagtttatatttttccatctttaaatatt |
288 |
Q |
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| T |
3448896 |
ttccatccaagtcaaagcttatatttttccatctttaaatatt |
3448938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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