View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_40 (Length: 339)
Name: NF18947_high_40
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 38317807 - 38317587
Alignment:
| Q |
16 |
tattcttgagtgcaggatgaagaagattaggacaaaaaaccattgaattgaatcacatgcttttctcgaagccaagggtgggagtacatgatattttcgt |
115 |
Q |
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| T |
38317807 |
tattcttgagtggaggatgaggaagattaggacaaaaatccattgaattgaatcacatgcttttctccaagccaagggtgggagtacatgatattttcgt |
38317708 |
T |
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| Q |
116 |
atgccaccactttgtattgtttgtttcctatggatatggttatatatagggacaaatttgagacgtcgttctaaactccattcaattaacattgattaaa |
215 |
Q |
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| T |
38317707 |
ttgccaccactttgtattgtttgtttcctatgggtatggttataggtagggacaaatttgagacgtcattctaaactccattcaattaacattgattaaa |
38317608 |
T |
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| Q |
216 |
accaatctatttataaaaaag |
236 |
Q |
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| T |
38317607 |
accaatctatttataaaaaag |
38317587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 38317536 - 38317491
Alignment:
| Q |
260 |
cataaaagtacacgtgagattttttactcgtaattgattgaccaat |
305 |
Q |
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| T |
38317536 |
cataaaagtacacgtgagattttttactcgtaattgattgaccaat |
38317491 |
T |
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