View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18947_high_41 (Length: 334)
Name: NF18947_high_41
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_41 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14245322 - 14245434
Alignment:
| Q |
1 |
ctgatgttttgggtttcaggtggggactccaagtggctgcggaacttaatcttaacaaggtcatctttgaactggatgcgcaggtggtgattaattgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14245322 |
ctgatgttttgggtttcaggtggggactccaagtggctgcggaacttaatcttaacaaggtcatctttgaactggatgcacaggtggtgattaattgttt |
14245421 |
T |
|
| Q |
101 |
caaagggctgtca |
113 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14245422 |
caaagggctgtca |
14245434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 14245980 - 14246101
Alignment:
| Q |
204 |
atttcactaatttcacactataccatcagtttaaacatactctcgagtcttagataatgggttgtgagattacacaattattagcccttgcataggaaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14245980 |
atttcactaatttcacactataccatcagtttaaacatactcttgagtctt-gataatgggttgtgagattacacaattattagcccttgcttaggaaaa |
14246078 |
T |
|
| Q |
304 |
taata--gagttatttgtctctg |
324 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
14246079 |
taatattgagttatttgtctctg |
14246101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 14245467 - 14245549
Alignment:
| Q |
108 |
ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcctgagctag |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14245467 |
ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcgtgagctag |
14245549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 14380225 - 14380124
Alignment:
| Q |
204 |
atttcactaatttcacactataccatcagtttaaacatactctcgagtcttagataatgggttgtgagattacacaattattagcccttgcataggaaaa |
303 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| |||||||||||||||||||| ||||||| ||||| |||||||||| ||| ||||||| |||||||| |
|
|
| T |
14380225 |
atttcactggttccacactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaattgttaacccttgcttaggaaaa |
14380126 |
T |
|
| Q |
304 |
ta |
305 |
Q |
| |
|
|| |
|
|
| T |
14380125 |
ta |
14380124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 23748847 - 23748927
Alignment:
| Q |
108 |
ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcctgagct |
188 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||||||| |||||||||| ||| ||| ||| ||||| |||||| |
|
|
| T |
23748847 |
ctgtcacgaattgtatgccaatatggctgatgtttctgttttttttattagtcgtgtctgaaataaggctgcgcatgagct |
23748927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 23548015 - 23548069
Alignment:
| Q |
108 |
ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgt |
162 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
23548015 |
ctgtcacgatttgtatgccaatatggctgatgtttctgttgtttttattagtcgt |
23548069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University