View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_42 (Length: 325)
Name: NF18947_high_42
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 40442277 - 40441983
Alignment:
| Q |
13 |
aatattgatcaagttggtaaaagattgtgtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttagtttctatca |
112 |
Q |
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| T |
40442277 |
aatattgatcaagttggtaaaagattgtgtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttagtttctatca |
40442178 |
T |
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| Q |
113 |
tactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgag |
212 |
Q |
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| T |
40442177 |
tactccgtgtgcttgaaaatttgtatactcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgag |
40442078 |
T |
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| Q |
213 |
tcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccagttag |
307 |
Q |
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| T |
40442077 |
tcgaggtgtttcaaagcttgaatcttaacctaccaaaggttctataatgcagaatgcagagatacctaccagaatgcaggatataaaccagttag |
40441983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 18812934 - 18812828
Alignment:
| Q |
149 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaa |
248 |
Q |
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||||||||||||||||||||| | |||||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||| |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaa |
18812835 |
T |
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| Q |
249 |
aggttct |
255 |
Q |
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| T |
18812834 |
atgttct |
18812828 |
T |
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