View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_43 (Length: 305)
Name: NF18947_high_43
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_43 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 27982408 - 27982688
Alignment:
| Q |
9 |
ataattctttacatatttcttctaggcatataatcctttaaaatgcaaactacgtatataaagatgtgagtctcatgaatcaccgtataccattaagagt |
108 |
Q |
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| T |
27982408 |
ataattctttacatatttcttctaggcatataatcctttaaaatgcaaactacgtatataaagatgtgattctcatgaatcaccgtataccattaagagt |
27982507 |
T |
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| Q |
109 |
atttcattggtaatttatacctaaaactccaaatcaagacttgtatactctctcaaaagaaaaacagaatcaatgtcatttagaattagatgatgtgact |
208 |
Q |
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| T |
27982508 |
atttcattggtaatttatacctaaaactccaaatcaagacttgtatactctctcgatagaaaaacaaaatcaatgtcatttagaattagatgatgtgact |
27982607 |
T |
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| Q |
209 |
ttatggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaatcaccacat |
289 |
Q |
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| T |
27982608 |
ttatggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaatcaccacat |
27982688 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 2658261 - 2658318
Alignment:
| Q |
223 |
ataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaa |
280 |
Q |
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| T |
2658261 |
ataaaataactgaaaacaaatcaaataccctcttccacctggaggatcaagtaatgaa |
2658318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 2637277 - 2637211
Alignment:
| Q |
213 |
ggctgatgatataaaataactgaaaacaaatcaaataccattttccacctagaggagcaagtaatgaa |
280 |
Q |
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| T |
2637277 |
ggctgatgatacaaaataactgaaaacaaatcaaataccctttt-cacttggaggatcaagtaatgaa |
2637211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 2637383 - 2637348
Alignment:
| Q |
21 |
atatttcttctaggcatataatcctttaaaatgcaa |
56 |
Q |
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| T |
2637383 |
atatttcttctaggcatataatactttaaaatgcaa |
2637348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 35949 - 35880
Alignment:
| Q |
212 |
tggctgatgatataaaataactgaaaacaaatcaaata-ccattttccacctagaggagcaagtaatgaa |
280 |
Q |
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| T |
35949 |
tggctgatgatacaaactaactgaaagcaaatcaaataccccttttccacctggaggttcaagtaatgaa |
35880 |
T |
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