View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_44 (Length: 300)
Name: NF18947_high_44
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 17646625 - 17646351
Alignment:
| Q |
8 |
ccaagaatattagaggccaatgcatgtactttcaaaatctataaatatatcaataaattcattttgcaatctagtctaatttaatataagactttctaat |
107 |
Q |
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| T |
17646625 |
ccaataatattagaggccaatgcatgtactttcaaaatctataaaaatatcaataaattcattttgcaatctagtctaatttaatataagactttctaat |
17646526 |
T |
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| Q |
108 |
agtgtgcaatatatataaagaaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgtacacactattttaatacgtacacact |
207 |
Q |
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| T |
17646525 |
agtgtgaaatatatataaataaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgtacacactattttaatacgtacacact |
17646426 |
T |
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| Q |
208 |
ctcttttgtctgatatatcatgaaaacataaataattcctaaaatgtcattccatttattgaaaatacataaaac |
282 |
Q |
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| T |
17646425 |
ctcttttgtctgatatatcatgaaaacataaataattcctaaaatgtcattccatttattgaaaatacataaaac |
17646351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 17674838 - 17674908
Alignment:
| Q |
112 |
tgcaatatatataaagaaatcctttgaaaggagtattatttctgatttcataaaataaattttaatgcgta |
182 |
Q |
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| T |
17674838 |
tgcaatatacataaaggaatcctatgaaaagagtaatattcgtgatttcataaaatgaactttaatacgta |
17674908 |
T |
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