View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_57 (Length: 250)
Name: NF18947_high_57
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_57 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 50140542 - 50140775
Alignment:
| Q |
17 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttnnnnnnnnnntggagtaaaaggtcattttgatttgtga |
116 |
Q |
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| T |
50140542 |
tgaaatataattacaattatatgattaaactattagatggtgacctatcacgttttatttttaaaaaaaaa-tggagtaaaaggtcattttgatttgtga |
50140640 |
T |
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| Q |
117 |
gtttgtgattcttttttgaatgaaaaatgttagttgttagattaatatttactcatttgtcggatttaaatttaagatcttcaacttcttatcgtttaac |
216 |
Q |
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| T |
50140641 |
gtttgtgattcttttttgaatgataaatgtttgttgttagattaatatttcctcatttgtcgggtttaaatttaagatctccaacttcttatcgtttaac |
50140740 |
T |
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| Q |
217 |
tcacatcagtttagctacccaa-ccccaattgcga |
250 |
Q |
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| T |
50140741 |
tcacatcaatttagctacccaacccccaattgcga |
50140775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 44751944 - 44751978
Alignment:
| Q |
143 |
atgttagttgttagattaatatttactcatttgtc |
177 |
Q |
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| T |
44751944 |
atgttagtggttagattaatatttactcatttgtc |
44751978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 17080025 - 17079986
Alignment:
| Q |
145 |
gttagttgttagattaatatttactcatttgtcggattta |
184 |
Q |
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| T |
17080025 |
gttagttgttacattaatatttactcatttgtcgggttta |
17079986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 9834623 - 9834665
Alignment:
| Q |
128 |
ttttttgaatgaaaaatgttagttgttagattaatatttactc |
170 |
Q |
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| T |
9834623 |
ttttttgaatgacatatgttagttgttaggttaatatttactc |
9834665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 12020170 - 12020125
Alignment:
| Q |
128 |
ttttttgaatgaaaaatgttagttgttagattaatatttactcatt |
173 |
Q |
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| T |
12020170 |
ttttttgaatggcaaatgttaatagttagattaatatttactcatt |
12020125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 13380506 - 13380474
Alignment:
| Q |
145 |
gttagttgttagattaatatttactcatttgtc |
177 |
Q |
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| T |
13380506 |
gttagttgttagattaatatttactcttttgtc |
13380474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 18148762 - 18148807
Alignment:
| Q |
132 |
ttgaatgaaaaatgttagttgttagattaatatttactcatttgtc |
177 |
Q |
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| T |
18148762 |
ttgaatgacaaatgttaattattagaataatatttactcatttgtc |
18148807 |
T |
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