View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_67 (Length: 239)
Name: NF18947_high_67
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40442256 - 40442482
Alignment:
| Q |
1 |
ttttaccaacttgatcaatattttggacatccttgagattgaggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatccta |
100 |
Q |
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| T |
40442256 |
ttttaccaacttgatcaatattttggacatccttgtgattgaggcactgattacttttctatgtccatacatgttcattgaaattgttcctcttatccta |
40442355 |
T |
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| Q |
101 |
agccatgaaaacaatatctatatagacttgctaatttttcaaatgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtg |
200 |
Q |
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| T |
40442356 |
agccatgaaaacaatatctatatagacttgctaatttttcaaatgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtg |
40442455 |
T |
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| Q |
201 |
ttgcttttctgttagtatctgttgttc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40442456 |
ttgcttttctgttagtatctgttgttc |
40442482 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 13063691 - 13063631
Alignment:
| Q |
144 |
tgagaagatagcttggcttctaattccataaataccatgtgcccatgcttgagggtgttgc |
204 |
Q |
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||||| ||||||||||||||||||||| ||| |||| |||| |||||||||||| |||| |
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| T |
13063691 |
tgagatgatagcttggcttctaattcctgaaacaccaaatgccaatgcttgagggtattgc |
13063631 |
T |
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