View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_high_78 (Length: 213)
Name: NF18947_high_78
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 37413882 - 37414057
Alignment:
| Q |
16 |
agatgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaagttatgcataa |
115 |
Q |
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| T |
37413882 |
agatgaatgtgtgtttcttttatgattatcgtgatctttttatacattattgtcaatatttcatctgtccattagacttcaccttacaagttatgcataa |
37413981 |
T |
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| Q |
116 |
ttacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
191 |
Q |
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| T |
37413982 |
ttacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
37414057 |
T |
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Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 23005637 - 23005469
Alignment:
| Q |
19 |
tgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaagttatgcataatta |
118 |
Q |
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| T |
23005637 |
tgaatgtgtgtttcttttatgatcatcatgatctttttatacatt---gtcaatatttcatctgtccattaaatttcaccttacaagttatgcataatta |
23005541 |
T |
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| Q |
119 |
catgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
191 |
Q |
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| T |
23005540 |
catgcactgatatacattaaacgtgtct-agcctttaaagtataactcacatcttacttaacccttttccaca |
23005469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 16806911 - 16806743
Alignment:
| Q |
16 |
agatgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaagttatgcataa |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16806911 |
agatgaatgtgtgtttcttttatgatcatcatgatctttttatacatt---gtcaatatttcatctatccattagacttcaccttacaagttatgcataa |
16806815 |
T |
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| Q |
116 |
ttacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
191 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16806814 |
ttacatgcactgatatgcactaaacgtgtct-agcctttaaagt---actcacatcttacttaaccctcttccaca |
16806743 |
T |
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