View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_11 (Length: 532)
Name: NF18947_low_11
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 50140829 - 50141316
Alignment:
| Q |
18 |
ataatatttttcaattaaatcaactaacgaagaacacatttgaagattaaattaacaacttaaaaacatatatgtagactaaaatgactaatcaaatata |
117 |
Q |
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| T |
50140829 |
ataatatttttcaattaaatcaactaacgaagaacacatttgaagattaaattaacaatttaaaaacatatatgtagactaaaatgactaatcaaatata |
50140928 |
T |
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| Q |
118 |
tatttgaagatgtgtttacaattttgatatatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggttnnnnnnnnnnnnggc |
217 |
Q |
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| T |
50140929 |
tatttaaaaatgtgtttacaattttgatacatccgtgaactatagcaaactcgtctcacacattcatagatcaatatggttggttaaaaaaaaa---gtc |
50141025 |
T |
|
| Q |
218 |
atttattctataactctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaattcaatgc |
317 |
Q |
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| T |
50141026 |
atttattctataactctaatcgaagaagtatgaattaacaattacacacacgtacacgtccttggtatctaactttggttagacaagacaaatttaatgc |
50141125 |
T |
|
| Q |
318 |
tctaatcaaatatgctttctttgatgctattttgccatctcttttctccatgtgatgtaaagtaacattcacttgatgaggaaatttagttcatcaatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50141126 |
tctaatcaaatatgctttctttgatgctattttgccatctcttttctccatgtgatgtaaagtaacattcacttgatgaggaaatttagttcatcaatca |
50141225 |
T |
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| Q |
418 |
agtataaagataaatgcccatctatctatcgttgagatgagattatgccgtaggaccataaactaaagctaaatataggcaaaggtgagtg |
508 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50141226 |
agtgtaaagataaatgcccatctatctatcgttgagatgagattatgccgtaggaccataaactaaagctaaatataggcaaaggtgagtg |
50141316 |
T |
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