View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_18 (Length: 445)
Name: NF18947_low_18
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 427
Target Start/End: Original strand, 55382393 - 55382804
Alignment:
| Q |
16 |
catctatcacaagcaaataatagcagtttgcaaaccatagttttggctataaattaacggttaaaacaacagcattcgctcacctgcttgtatccttggc |
115 |
Q |
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| T |
55382393 |
catctatcacaagcaaataatagcagtttgcaaaccatagttttggctataaattaacggttaaaacaacagcattcattcacctgcttgtatccttggc |
55382492 |
T |
|
| Q |
116 |
caacaaagcgagcacgcaatgttatgttaggtgaagaagtggttgcagctttgataatagcagcctcctcgggaagtagctgagaagtatctgtaggaag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
55382493 |
caacaaagcgagcacgcaatgttatgttaggtgaagaagtggttgcagctttgataatagcagcctcctcgggaagtagatgagaagtatctgtaggaag |
55382592 |
T |
|
| Q |
216 |
tgcaggctcagcatttggatttgagtttccaaaaaggggagccccttgaatataccttcattttgtagtaagaaatgaaatgaataattgattgtatagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382593 |
tgcaggctcagcatttggatttgagtttccaaaaaggggagccccttgaatataccttcattttgtagtaagaaatgaaatgaataattgattgtatagt |
55382692 |
T |
|
| Q |
316 |
aagttatgtttgtgttggcatggtctgcattttataaattgtagaagttgagtatcaaaaaagactacttttgagggatgtatgtttccttgaaagagtg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55382693 |
aagttatgtttgtgttggcatggtctgcattttataaattgtagaaattgagtatcaaaaaagactacttttgagggatgtaagtttccttgaaagagtg |
55382792 |
T |
|
| Q |
416 |
taggtgttacct |
427 |
Q |
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| T |
55382793 |
tgggtgttacct |
55382804 |
T |
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