View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_19 (Length: 441)
Name: NF18947_low_19
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 42038163 - 42038584
Alignment:
| Q |
1 |
acaagattctacggttccaactcatggctggatgtgtctcccactcatagaagaagtatgcactgccaagattttaccgagaaacacttccaccatcaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42038163 |
acaagattctacggttccaactcacggctggatgtgtctcccactcatagaagaagtatgcactgccaagattttaccgagaaacacttccacgatcaaa |
42038262 |
T |
|
| Q |
101 |
attttgccctatcgatcaaactttgccctatccaacaagaactcaacataaatagatcatcccaacaaagattagatcattgtgagagttccaaatagtc |
200 |
Q |
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| T |
42038263 |
attttgccctatcgatcaaactttgccctatccaacaagaactcaacataaatagatcatcccaacaaagattagatcattgtgagagttccaaatagtc |
42038362 |
T |
|
| Q |
201 |
cgctagacaacatgtcatacaagcgtcatgtcaaacaagcgtcaaacataacctaaccatcttactataacccaacccccaaaaagacacaaaagcaacc |
300 |
Q |
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| T |
42038363 |
cgctagacaacatgtcatacaagcgccatgtcaaacaagcgtcaaacataacctgaccatcttactataacccaacccccaaaaagacacaaaagcaacc |
42038462 |
T |
|
| Q |
301 |
aagatcctgaagaagaacaaactgccaacccaactatccaactatacaataccacatagagaggatggtgtcaaaggacatgaacaagtgaatcaccgac |
400 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42038463 |
aagatcctgaagaagaacaaactgccaacccaaccatccaactatacaataccacatagagacgatggtgtcaaaggacatgaacaagtgaatcaccgac |
42038562 |
T |
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| Q |
401 |
tccatcagagtaccacagaaaa |
422 |
Q |
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||||||||| |||||||||||| |
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| T |
42038563 |
tccatcagattaccacagaaaa |
42038584 |
T |
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