View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_21 (Length: 439)
Name: NF18947_low_21
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 22 - 428
Target Start/End: Original strand, 35349873 - 35350285
Alignment:
| Q |
22 |
acttcaccattttctcatattctcattccttttaatggcgttagggtttcattcttcttagattcattctcttcaccaaatcgaaaaccatgaatctctc |
121 |
Q |
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| T |
35349873 |
acttcaccattttctcatattctcattccttttaatggcgttagggtttcattcttcttagattcattctcttcaccaaatcgaaaaccatgaatctctc |
35349972 |
T |
|
| Q |
122 |
actaccatcaccttccactttccgcgtcgttcctctctcccactgcacttcttgctttcaattcaatcttcgttttcatccttctaactgttttcacaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35349973 |
actaccatcaccttccactttccgcgtcgttcctctctcccactgcacttcttgctttcaattcaatcttcgttttcatccttctaaccgttttcacaat |
35350072 |
T |
|
| Q |
222 |
tcgtgttcgagttcgttgaagtttaatcctcctaccgtaagaagaagacggattgcttgtagtgttaatgaatctgatggtgataacgacgaggtactt- |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35350073 |
tcgtgttcgagttcgttgaagtttaatcctcctaccgtaagaagaagacggattgcttgtagtgttaatgaatctgatggtgataacgacgaggtacttt |
35350172 |
T |
|
| Q |
321 |
-----tttcagtttcagtttttgcattcattgttgaagggaagttttatacactaagtaaggatttattattttgatttgaattgaagtttgtgaaaatt |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35350173 |
ttcagtttcagtttcagtttttgcattcattgttgaagtgaagttttatacactaagtaaggattgattattttgatttgaattgaagtttgtgaaaatt |
35350272 |
T |
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| Q |
416 |
gtgcaaaattcat |
428 |
Q |
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|||| |||||||| |
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| T |
35350273 |
gtgcgaaattcat |
35350285 |
T |
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