View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_22 (Length: 436)
Name: NF18947_low_22
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_22 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 170006 - 169826
Alignment:
| Q |
18 |
aaattattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaat |
117 |
Q |
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| T |
170006 |
aaattattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaat |
169907 |
T |
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| Q |
118 |
ggtataattacgagcgaccatattacatttggtccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
198 |
Q |
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| T |
169906 |
ggtataattacgagcgaccatattacatttgtttcatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
169826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 169732 - 169673
Alignment:
| Q |
266 |
ctatgtcagaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
325 |
Q |
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| T |
169732 |
ctatgtcaaaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
169673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 31053243 - 31053415
Alignment:
| Q |
18 |
aaattattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaat |
117 |
Q |
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| T |
31053243 |
aaattattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccg--- |
31053339 |
T |
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| Q |
118 |
ggtataattacgagcgaccatattacatttggtccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
198 |
Q |
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| T |
31053340 |
-----aattacgagcgaccatattacatttgttccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
31053415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 31053450 - 31053533
Alignment:
| Q |
338 |
atgtcttcctgtacctctactatgtttgtgctaccaactgatgcatactcaaaagaaacttaattatattgtattgttatgtat |
421 |
Q |
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| T |
31053450 |
atgtcgtcctgtacctctactatgtttgtgctaccaactgatgcgtactcaaaagaaacttaattatattgtattgttatgtat |
31053533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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