View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_23 (Length: 426)

Name: NF18947_low_23
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_23
NF18947_low_23
[»] chr4 (3 HSPs)
chr4 (1-408)||(48041213-48041627)
chr4 (211-256)||(40962796-40962841)
chr4 (211-247)||(32303802-32303838)
[»] chr2 (2 HSPs)
chr2 (301-360)||(27332779-27332838)
chr2 (301-354)||(18206870-18206923)
[»] chr6 (2 HSPs)
chr6 (213-360)||(28617119-28617267)
chr6 (211-267)||(19222290-19222346)
[»] chr1 (2 HSPs)
chr1 (214-266)||(3378187-3378239)
chr1 (211-247)||(42294614-42294650)
[»] chr3 (1 HSPs)
chr3 (211-246)||(50561735-50561770)
[»] chr7 (1 HSPs)
chr7 (305-354)||(21066224-21066273)
[»] chr5 (1 HSPs)
chr5 (211-247)||(15105919-15105955)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 48041627 - 48041213
Alignment:
Q  1 ataaaatgagagtaattttcatgtactatcaatgtaaaatatttcaaatttgtcaacaaacattaaccaccatttatgtgactttttaagtaacgagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||||    
T  48041627 ataaaatgagagtaattttcatgtactatcaatgtaaaatatttcaaatttgtcaataa-catgaaccaccatttatgtgactttttaagtaacaagtga 48041529  T
Q  101 ttgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatccttgtaaaaataataaagaatattttttccatatca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  48041528 ttgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatccttgtaaaaatagtaaagaatattttttccatacca 48041429  T
Q  201 gcgtcattac------aattctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatacctatacgtgagt---atcacgcacctt 291  Q
    ||||||||||      ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||    ||||||| |||    
T  48041428 gcgtcattacaatctgaattctgctctttagccaacacaaaacactcgcgcccatttgaattgatcattatacctatgtgtgagttaactcacgcatctt 48041329  T
Q  292 atatgcctatgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttcttttcacacaaaacacgannnnnnncccttcaagtgc 391  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||    
T  48041328 atatgcctatgcgtgacttaagtgtatgtgacagcaacacaaaaacataacacttcacttttcttttcacccaaaacacga-ttttttcccttcaagtgc 48041230  T
Q  392 gaatttcacaaaactca 408  Q
    |||||||||||||||||    
T  48041229 gaatttcacaaaactca 48041213  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 40962841 - 40962796
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgcccatctgaatt 256  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||    
T  40962841 aattctgctcttctcccaacacaaaacactcgcgcccaactgaatt 40962796  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 32303802 - 32303838
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgccc 247  Q
    |||||||||||| | ||||||||||||||||||||||    
T  32303802 aattctgctcttcacccaacacaaaacactcgcgccc 32303838  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 27332779 - 27332838
Alignment:
Q  301 tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttcttttca 360  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  27332779 tgcgtgacttacgtgtatatgacagcaacacataaacataacacttcacttttcttttca 27332838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 18206923 - 18206870
Alignment:
Q  301 tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc 354  Q
    |||||||||||||||||||||||||||| ||| |||||| || |||||||||||    
T  18206923 tgcgtgacttaagtgtatatgacaacaaaacagaaacattacccttcacttttc 18206870  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 360
Target Start/End: Complemental strand, 28617267 - 28617119
Alignment:
Q  213 ttctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatacctatacgtgagta---tcacgcaccttat-atgcctatgcgtgac 308  Q
    |||| |||||||  ||||||||||| || ||| ||| |||||||||   |||||||| | |||||||    |||| |||||||| |||||| ||||||||    
T  28617267 ttctactctttaatcaacacaaaacgcttgcgtccaactgaattgactgttatacctctgcgtgagttaactcacacaccttattatgcctctgcgtgac 28617168  T
Q  309 ttaagtgtatatgacaacaacacaaaaacataacacttcacttttcttttca 360  Q
    ||||| ||||| |||||||   || || ||||||||||||||||||||||||    
T  28617167 ttaagagtataagacaaca---cagaaccataacacttcacttttcttttca 28617119  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 19222290 - 19222346
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatac 267  Q
    |||||||||||||||| |||||||||| ||||||| || ||||||||| ||||||||    
T  19222290 aattctgctctttagctaacacaaaacgctcgcgctcaactgaattgaccattatac 19222346  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 3378239 - 3378187
Alignment:
Q  214 tctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattata 266  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||| |||||||    
T  3378239 tctgctctttagccaacacaaaacgctcccgcccaactgaattgaccattata 3378187  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Complemental strand, 42294650 - 42294614
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgccc 247  Q
    |||||||||||| | ||||||||||||||||||||||    
T  42294650 aattctgctcttcacccaacacaaaacactcgcgccc 42294614  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 50561770 - 50561735
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgcc 246  Q
    |||||||||||||| |||||||||||||||||||||    
T  50561770 aattctgctctttatccaacacaaaacactcgcgcc 50561735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 21066273 - 21066224
Alignment:
Q  305 tgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc 354  Q
    |||||||||||||||||||| ||| ||| |||||| || |||||||||||    
T  21066273 tgacttaagtgtatatgacagcaaaacataaacattacccttcacttttc 21066224  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 15105919 - 15105955
Alignment:
Q  211 aattctgctctttagccaacacaaaacactcgcgccc 247  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  15105919 aattctgctctttatccagcacaaaacactcgcgccc 15105955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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