View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_25 (Length: 421)

Name: NF18947_low_25
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_25
NF18947_low_25
[»] chr8 (4 HSPs)
chr8 (13-404)||(44945542-44945954)
chr8 (13-404)||(44943888-44944297)
chr8 (13-85)||(44941059-44941131)
chr8 (142-404)||(44940719-44940981)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 44945954 - 44945542
Alignment:
Q  13 aatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttc---------------------at 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||    
T  44945954 aatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttcgtggagttctgatgatacatcat 44945855  T
Q  92 cttccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgctattg 191  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945854 cttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgctattg 44945755  T
Q  192 tcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtcc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||    
T  44945754 tcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgcgctagttactcctggtcc 44945655  T
Q  292 cttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgt 391  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  44945654 cttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgt 44945555  T
Q  392 actttttggatac 404  Q
    |||||||||||||    
T  44945554 actttttggatac 44945542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 404
Target Start/End: Complemental strand, 44944297 - 44943888
Alignment:
Q  13 aatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagcagttcat------------------ctt 94  Q
    |||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||                  |||    
T  44944297 aatatcatggcgtctaatcttcttgctacaacagcaatcacattaagttcacttattggaatttttgctagcagttcatggagttctgatgatacatctt 44944198  T
Q  95 ccatacttcaaagtaattcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgctattgtca 194  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44944197 ccatacttcaaagtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtca 44944098  T
Q  195 tgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt 294  Q
    |||||| |||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44944097 tgtcagttttttaatcaccgcacctacactccgagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttggtccctt 44943998  T
Q  295 ggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtact 394  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  44943997 ggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtttgtact 44943898  T
Q  395 ttttggatac 404  Q
    ||||||||||    
T  44943897 ttttggatac 44943888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 44941131 - 44941059
Alignment:
Q  13 aatatcatggcgtctactcttctttctacaacagctatcacactaagttcacttattggaatttttgctagca 85  Q
    ||||| ||||| |||||||| ||  |||||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  44941131 aatataatggcatctactctactagctacaacagcaatcacactaagttcactaattggagtttttgcaagca 44941059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 404
Target Start/End: Complemental strand, 44940981 - 44940719
Alignment:
Q  142 tgcttccttgttgcatttttatgcaatgttcagtctataagatgctattgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcat 241  Q
    |||||||||||||||||| |||| ||| | || |||||||||| ||||   ||||| || || ||||||||  | ||  ||||||  |  |||||||  |    
T  44940981 tgcttccttgttgcatttctatgtaatatgcaatctataagatactatgcacatgtgagtttcttaatcaatacacctgcactcaatggcaaaaaggatt 44940882  T
Q  242 atatggaatatattgctaagacattgaatcgtgctagtcactcttggtcccttggcttgcgagcattttacttatcatttcctctcttcctatggattta 341  Q
     ||| |||||| |||| || |||||||| ||||  ||| | |||||||| ||||| ||| | || || |||   ||| |||| ||  |||||||||||||    
T  44940881 ttatcgaatatgttgcaaaaacattgaaccgtggaagttattcttggtctcttggtttgagggctttctacacgtcaattccacttgtcctatggattta 44940782  T
Q  342 tgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatac 404  Q
    |||||| ||||| ||||||| |||||  || || ||||| || | ||||||||| ||||||||    
T  44940781 tgggcccatacccatgtttatttgttcttgcttcacatcatttattttgtacttcttggatac 44940719  T

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