View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_33 (Length: 372)
Name: NF18947_low_33
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 2440299 - 2440641
Alignment:
| Q |
11 |
cagagagtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagat |
110 |
Q |
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| T |
2440299 |
cagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcttgctaaagaagat |
2440398 |
T |
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| Q |
111 |
gggaactataagaatgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaac |
210 |
Q |
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| T |
2440399 |
gggaactataagaatgatttgatgaaattcactagttttgttagagggaagaaggtgccatttcagggaaattatcaatcaattgtttaggcttgagaac |
2440498 |
T |
|
| Q |
211 |
tatgagcagcgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgcgcctgaggccgattgggttagg |
310 |
Q |
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| T |
2440499 |
tatgagcagtgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgcgcctgaggccgattgggttagg |
2440598 |
T |
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| Q |
311 |
atttaggaacaaagacggaacaccaagaaaacttcactctact |
353 |
Q |
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| T |
2440599 |
atttaggaacaaagacggaacaccaagaaaacttcactctact |
2440641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 311
Target Start/End: Complemental strand, 41665554 - 41665264
Alignment:
| Q |
25 |
aattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaa |
124 |
Q |
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| T |
41665554 |
aattgacatcatttgcaaaagaggctagtgcgacattagctaaagagttctttgcaaatgcatatatgggtactgccaaagaagatgggaactatgagaa |
41665455 |
T |
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| Q |
125 |
tgatttgatgaaattcactatttttgttagagggaagaaggtgccatttca--gggaaattatcaatcaattgtttaggcttgagaactatgagcagcgt |
222 |
Q |
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|||| ||||||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| || |
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| T |
41665454 |
tgatctgatgaaattcactagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgggcttgagaactatgagcagtgt |
41665355 |
T |
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| Q |
223 |
tcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc--gcctgaggccgattgggttagga |
311 |
Q |
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| T |
41665354 |
tcgtttgaagcaagaaagaccaagggctctaacattgatcatcaggagattcgtagcactctgtgcaggcccgaggctgattgggttagga |
41665264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 28 - 311
Target Start/End: Complemental strand, 41656789 - 41656503
Alignment:
| Q |
28 |
tgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataagaatga |
127 |
Q |
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| T |
41656789 |
tgacaacatttgcaaaagaggctagtgcc-cattagctaaagagttctttgcaaatgcatatctgggtcctgctaaagaagatgggaactataagaatga |
41656691 |
T |
|
| Q |
128 |
tttgatgaaattcactatttttgttagagggaagaaggtgccatttca--gggaaattatcaatcaattgtttaggcttgagaactatgagcagcgttca |
225 |
Q |
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| T |
41656690 |
tttgatgaaattcactagttttgtcagaggcaagatggtgccatttcatgagaaaattatcaatcgattgtttgggctagagaactatgagcagtgttca |
41656591 |
T |
|
| Q |
226 |
tttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtgc--gcctgaggccgattgggttagga |
311 |
Q |
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| T |
41656590 |
tttgaagcaagaaaggcaaagggatctaacattgatcatcaggagattcttagtactctgtgcaggcccgaggccgattggattagga |
41656503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 41648703 - 41648412
Alignment:
| Q |
24 |
gaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataaga |
123 |
Q |
| |
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|||||||||| ||||| |||||||| |||| ||||| |||||||| || | ||||||||||||| |||||| ||||||||||||||||| |||||| |
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| T |
41648703 |
gaattgacatagcttgcagaagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcctactaaagaagatgggaacaataaga |
41648604 |
T |
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| Q |
124 |
atgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggcttgagaactatgagcagcg |
221 |
Q |
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| T |
41648603 |
atgatctaatgcaattcactagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggcttgagaacaatgaggagtg |
41648504 |
T |
|
| Q |
222 |
ttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttagga |
311 |
Q |
| |
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| T |
41648503 |
ttcctttgaaacaagaaagaccaagggctctaacattgatcatcaggagattcacagtactctgtgtaggcccgaggccgattgggttagga |
41648412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 41716571 - 41716298
Alignment:
| Q |
24 |
gaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataaga |
123 |
Q |
| |
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| T |
41716571 |
gaattgacatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaa------------------ga |
41716490 |
T |
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| Q |
124 |
atgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcaggg--aaattatcaatcaattgtttaggcttgagaactatgagcagcg |
221 |
Q |
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||||| ||||||||||||| |||||| |||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||| || | |
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| T |
41716489 |
atgatcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtg |
41716390 |
T |
|
| Q |
222 |
ttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttagga |
311 |
Q |
| |
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| T |
41716389 |
ttcatttgaagcaagaaaggccaagggttctaacgttgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttagga |
41716298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 24 - 311
Target Start/End: Complemental strand, 41706768 - 41706495
Alignment:
| Q |
24 |
gaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcatatattggtcctgctaaagaagatgggaactataaga |
123 |
Q |
| |
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| T |
41706768 |
gaattgacatcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaa------------------ga |
41706687 |
T |
|
| Q |
124 |
atgatttgatgaaattcactatttttgttagagggaagaaggtgccatttcagg--gaaattatcaatcaattgtttaggcttgagaactatgagcagcg |
221 |
Q |
| |
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|||| ||||||||||||| |||| | ||||||||||| || |||||||| | | ||||||||| |||||||| |||||||||||||||||||| | |
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| T |
41706686 |
atgagcgaatgaaattcactagttttatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtg |
41706587 |
T |
|
| Q |
222 |
ttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctgtg--cgcctgaggccgattgggttagga |
311 |
Q |
| |
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||| |||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |
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| T |
41706586 |
ttcctttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttagga |
41706495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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