View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_35 (Length: 362)
Name: NF18947_low_35
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 42473783 - 42473456
Alignment:
| Q |
20 |
tatagaaaggtaatgggtgaccaactttgaatgttattgattttcaataagtttttgaagactaattcatttctatgtgctctattttcaattcaagaac |
119 |
Q |
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| T |
42473783 |
tatagaaaggtaatgggtgaccaattttgaatgatattgattttcaataagtttttgaagactaattcatttctatgtgctctattttcaattcaagaac |
42473684 |
T |
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| Q |
120 |
tagaagagattgtgtggagttgtaatggcaataggagcccaaaagagtttaattttaatgatttcataaaattctgctaggatatagtaaaaaatttgaa |
219 |
Q |
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| T |
42473683 |
tagaagagattgtgtggagttgtaatggcaataggagcccaaaagagtttaattttaatgatttcataaaattctgctaggatatagtaaaaaatttgaa |
42473584 |
T |
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| Q |
220 |
gtggtttaatttgtccaaaagtttcatgaaattgtcatttgcctaaaattgaaaagatgggtgttcagcaagggtaatggctcaattctcattttacaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
42473583 |
gtggtttaatttgtccaaaagtttcatgaaattgtcatttgcctaaaattgaaaagatgggtattcagcaagggaaatggctcaattctcattttacaat |
42473484 |
T |
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| Q |
320 |
atttttataaaaactctcatccaacttt |
347 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42473483 |
atttttataaaaactctcatccaacttt |
42473456 |
T |
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