View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_36 (Length: 355)

Name: NF18947_low_36
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_36
NF18947_low_36
[»] chr3 (38 HSPs)
chr3 (130-340)||(6141108-6141318)
chr3 (130-340)||(6264507-6264717)
chr3 (130-340)||(6258024-6258234)
chr3 (130-340)||(13271550-13271760)
chr3 (130-340)||(6167713-6167923)
chr3 (130-338)||(6244115-6244323)
chr3 (1-130)||(6140892-6141021)
chr3 (1-130)||(6257808-6257937)
chr3 (1-130)||(6264288-6264417)
chr3 (1-130)||(13271847-13271976)
chr3 (204-340)||(6237650-6237785)
chr3 (130-339)||(6915923-6916132)
chr3 (130-337)||(6881338-6881545)
chr3 (1-130)||(6236331-6236460)
chr3 (130-339)||(6592351-6592560)
chr3 (130-336)||(7748824-7749030)
chr3 (1-100)||(6243923-6244022)
chr3 (1-124)||(6592653-6592776)
chr3 (28-130)||(6167524-6167626)
chr3 (130-291)||(6723125-6723286)
chr3 (1-130)||(6898694-6898823)
chr3 (130-339)||(6898910-6899119)
chr3 (1-100)||(6850603-6850702)
chr3 (1-130)||(6723373-6723502)
chr3 (1-130)||(6881122-6881251)
chr3 (1-130)||(7748608-7748737)
chr3 (1-130)||(6915707-6915836)
chr3 (130-291)||(6850327-6850487)
chr3 (11-130)||(5262399-5262518)
chr3 (12-128)||(5279276-5279392)
chr3 (130-209)||(6236547-6236626)
chr3 (53-98)||(5248814-5248859)
chr3 (51-123)||(5297401-5297473)
chr3 (239-283)||(6795690-6795734)
chr3 (239-283)||(7586787-7586831)
chr3 (239-283)||(8470482-8470526)
chr3 (137-184)||(8588563-8588610)
chr3 (136-184)||(8570111-8570159)
[»] chr1 (1 HSPs)
chr1 (130-339)||(35141367-35141576)
[»] scaffold1643 (2 HSPs)
scaffold1643 (50-130)||(825-905)
scaffold1643 (245-282)||(1089-1126)
[»] scaffold0425 (1 HSPs)
scaffold0425 (212-281)||(13445-13513)
[»] chr7 (1 HSPs)
chr7 (249-281)||(6574391-6574423)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 6141108 - 6141318
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||    
T  6141108 agtcattgatggtgagcctcatgaggtttctatttggttgaagagcctccaagaccgagacacgtgcttctgttactgagccatccatttctctccattc 6141207  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||||||| ||    
T  6141208 atcgtacgacaaacttaattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctagatcagaaacatttttcaaccctgaaatttga 6141307  T
Q  330 agccttccttt 340  Q
    |||||||||||    
T  6141308 agccttccttt 6141318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 6264507 - 6264717
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  6264507 agtcattgatgctgagcctcgtgagatttctatttggtcgcagagcctccaagaccgagaaacatgcttcagttactgagccatccatttctctccattc 6264606  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  6264607 atcatacgacaaacttaattcttctaaatgtttcttatgtttcaaatttgctgccatagcatctgctggatcagccacatttttcaaccctgaaatttga 6264706  T
Q  330 agccttccttt 340  Q
    |||||||||||    
T  6264707 agccttccttt 6264717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 6258024 - 6258234
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||| |||||||||| |||||||||||||||| ||||||||    
T  6258024 agtcattgatggtgagcctcatgaggtttctattaggttgaagagcctccaagaccgatacacgtgcttcagtttctgagccatccatttctctccattc 6258123  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |||||||||||||||||||||    
T  6258124 atcatacgacaaacttaattcttctaaatgtttcttctctttcaaatttgctgccatagcaactgctggatccgccacgtttttcaaccctgaaattcga 6258223  T
Q  330 agccttccttt 340  Q
    |||||||||||    
T  6258224 agccttccttt 6258234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 130 - 340
Target Start/End: Complemental strand, 13271760 - 13271550
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  13271760 agtcattgatggtgagtctcatgaggtgtctatttggttgaagagcttccaagaccgagacacgtgcttcagttactaagccatccatttctctccattc 13271661  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||| ||    
T  13271660 atcatacgacaaacttaattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatgagccacatttttcaatcctgaaatttga 13271561  T
Q  330 agccttccttt 340  Q
    |||||||||||    
T  13271560 agccttccttt 13271550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 6167713 - 6167923
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||| ||||||||    
T  6167713 agtcattgatggtgagcctcatgagatttctatttggttgaagagcctccaagaccaagagacgtgcttcagtttctgagccttccatttctctccattc 6167812  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    |||||| |||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||||||||||| ||    
T  6167813 atcgtatgacatgattaattcttgtaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcggtcacattcttcaaccctgaaatttga 6167912  T
Q  330 agccttccttt 340  Q
    |||||||||||    
T  6167913 agccttccttt 6167923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 130 - 338
Target Start/End: Original strand, 6244115 - 6244323
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||||||||||   |||||  |||||||||| ||||| |||| ||||| ||||||||    
T  6244115 agtcattgatggtgagcctcacgaggttactatttggttgaagagcctccaagatagagacatgtgcttcagtttctgagtcatctatttctctccattc 6244214  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6244215 atcgtacgacaaacttaattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcagccacatttttcaaccctgaaattcga 6244314  T
Q  330 agccttcct 338  Q
    || ||||||    
T  6244315 agtcttcct 6244323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6140892 - 6141021
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6140892 caagggatctaaatgcaacatttgatgaattatagctgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 6140991  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
    | | | || |||||||||||||||||||||    
T  6140992 agggaactgcccaagtggtggcaactggga 6141021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6257808 - 6257937
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6257808 caagggatctaaatgcaacatttgatgaattatagccgcaaaactctgaaccaatgatctttattccatgacagcctgaaatggaaagcttcttgagaga 6257907  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
    | | | || |||||||||||||||||||||    
T  6257908 agggaacttcccaagtggtggcaactggga 6257937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6264288 - 6264417
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6264288 caagggatctaaatggaacatttgctgaattatagcggcaaaactctgaaccaatgatctctactccatgacagcctgaaatggaaagcttcttgagaga 6264387  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
    | | | || |||||||||||||||||||||    
T  6264388 agggaactgcccaagtggtggcaactggga 6264417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 13271976 - 13271847
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  13271976 caagggatctaaatggaacatttgatggattatagccgcaaaactctgaaccaatgatctctattccatgacagccagaaatggaaagcttctcgagaga 13271877  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
    | | | || |||||||||||||||||||||    
T  13271876 aggcaactgcccaagtggtggcaactggga 13271847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 204 - 340
Target Start/End: Original strand, 6237650 - 6237785
Alignment:
Q  204 actgagccatccatttcactccattcatcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcag 303  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6237650 actgagccatccatttctctcaattcatcgtacgacaaacttaattcttctaaatgtttcttatctttcaaatttgctgccatagcatctgctggatcag 6237749  T
Q  304 ccacatttttcaaccctgaaattcgaagccttccttt 340  Q
    | ||| ||| ||||||||||||| |||||||||||||    
T  6237750 caaca-tttacaaccctgaaatttgaagccttccttt 6237785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 130 - 339
Target Start/End: Original strand, 6915923 - 6916132
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| ||||||||||||||| |||| ||||||||||||||||||||||||||||   |||    |||||||||||||||   || ||| || ||||||||    
T  6915923 agtctttgatggtgagcctcatgagatttctatttggttgaagagcctccaagatagagatttgtgcttcagttactgacagattcatatctctccattc 6916022  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| || |||| ||||| ||||| |||||||||||||||||||||||||||| ||| ||||||||| ||||||   ||||||||||||||||||||| |     
T  6916023 atcatatgacaaacttagttcttctaaatgtttcttatctttcaaatttgctgccacagcatctgcaggatcaatgacatttttcaaccctgaaatttgg 6916122  T
Q  330 agccttcctt 339  Q
    ||||||||||    
T  6916123 agccttcctt 6916132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 130 - 337
Target Start/End: Original strand, 6881338 - 6881545
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| |||||||| || |||||||||||| |||||||||||||||||||||||||  || |   ||||||||||||||| ||||||||||| ||||||||    
T  6881338 agtctttgatggttagactcgtgaggtttatatttggttgaagagcctccaagacagaggcttgtgcttcagttactgatccatccatttctctccattc 6881437  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    || ||| ||||||||||| |||| ||||||||  ||||||| |||||||||| ||| ||||| ||| ||||||   ||||||| ||||||||||||| ||    
T  6881438 attgtatgacatacttaaatcttctaaatgttctttatcttccaaatttgctgccacagcatgtgcaggatcattgacattttccaaccctgaaatttga 6881537  T
Q  330 agccttcc 337  Q
    ||| ||||    
T  6881538 agctttcc 6881545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6236331 - 6236460
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |  |||||||||||| ||||| ||||||||||||||||||||    
T  6236331 caagggatctaaatggaacatttgatgaattatagccgcaaaactctgaaccaatgaacgttattccatgacatcctgatatggaaagcttcttgagaga 6236430  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
    | | | || |||||||||||||||||||||    
T  6236431 agggaactgcccaagtggtggcaactggga 6236460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 130 - 339
Target Start/End: Complemental strand, 6592560 - 6592351
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| ||||||||||||||| |||||||||||||||||||||||  ||||| |||  || ||  ||| ||||||| ||||||||||||||     || |     
T  6592560 agtctttgatggtgagcctcatgaggtttctatttggttgaagaatctccatgacagaggcatgtgcctcagttattgagccatccattttttgacaata 6592461  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||   ||||||| || |||||||||||||    
T  6592460 atcatatgacatacttaattcttttaaatgtttcttatctttcaaatttgctgcaatagcatctgctagatcaatgacattttccatccctgaaattcga 6592361  T
Q  330 agccttcctt 339  Q
    || |||||||    
T  6592360 aggcttcctt 6592351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 130 - 336
Target Start/End: Original strand, 7748824 - 7749030
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| |||||||| |||||| ||||||||||||||||||| |||||||| |||||  |||||  ||||||||||||||| ||||||||||| ||||||||    
T  7748824 agtctttgatggttagcctcatgaggtttctatttggttggagagcctctaagacagagacatgtgcttcagttactgatccatccatttctctccattc 7748923  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| || || |  |||||||||| ||||||||  ||||||| |||||||||| ||| |||||| || |||||    ||||| ||||||||||||||| ||    
T  7748924 atcatatgatacgcttaattcttctaaatgttctttatcttccaaatttgctgccacagcatcagcgggatcgatgacattattcaaccctgaaatttga 7749023  T
Q  330 agccttc 336  Q
    |||||||    
T  7749024 agccttc 7749030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 6243923 - 6244022
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  6243923 caagggatctaaatgtaaaatttgatgaattatagcggcaaaactctgaaccaatgatacctattccatgacagcctgaaatggaaagcttcttgagaga 6244022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6592776 - 6592653
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||| ||||||||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  6592776 caaggaatctaaatggaacatttgatgaattatagccgtaaaattctgtaccaatgatctctattccatcacagcctgaaaaggaaagcttcttgagaga 6592677  T
Q  101 acgaagctccccaagtggtggcaa 124  Q
      | | || |||||||||||||||    
T  6592676 ggggaactgcccaagtggtggcaa 6592653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 6167524 - 6167626
Alignment:
Q  28 aattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaacgaagctccccaagtggtggcaactg 127  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | | || ||||||||||||||||||    
T  6167524 aattatagccgaaaaactctgaaccaatgttctctattccatgacagccggaaatggaaagcttcttgagagaatggaactgcccaagtggtggcaactg 6167623  T
Q  128 gga 130  Q
    |||    
T  6167624 gga 6167626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 130 - 291
Target Start/End: Complemental strand, 6723286 - 6723125
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| ||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||  ||||| ||||||||| |||| |||||  |||||| |    
T  6723286 agtctttgatggtgagcctcatgaggtttttatttggttgaagagcctccaagacagagacatctgctttagttactgatccattcatttttctccatcc 6723187  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcat 291  Q
    ||| || |||||||||||||||| ||||||||  ||||||| |||||| ||| ||| |||||    
T  6723186 atcatatgacatacttaattcttctaaatgttctttatcttccaaattcgctgccacagcat 6723125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6898694 - 6898823
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||||| ||||| ||||||| ||||| |||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  6898694 caagggatctaaatggatcatttgatgaattgtagccacaaatctctgtaccaatgatatctattccatcacagcctgaaatggaaagcttcttgagaga 6898793  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
      | | || ||||||||| |||||||||||    
T  6898794 gggtaactgcccaagtgggggcaactggga 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 130 - 339
Target Start/End: Original strand, 6898910 - 6899119
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| |||||||| |||||| |||||||| ||||||||||||||||||| |||||  |||||| ||||| ||||||||| ||||||||||   |||| ||    
T  6898910 agtctttgatggttagcctcatgaggtttatatttggttgaagagcctctaagacagagacacgtgctttagttactgatccatccatttttatccaatc 6899009  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    |||||| |||| ||||||||||| ||| ||||  || |||||||||| |||| | | ||||| ||| |||||    || |||| ||||||||||||| ||    
T  6899010 atcgtatgacagacttaattcttctaactgttctttgtctttcaaatatgctgctacagcatatgcaggatctttgacgttttccaaccctgaaatttga 6899109  T
Q  330 agccttcctt 339  Q
    ||||||||||    
T  6899110 agccttcctt 6899119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6850702 - 6850603
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    |||||||| |||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  6850702 caagggatttaaatggaacatttgatgaattgtagccgtaaaactctggaccaatgatctctattccatcacagcctgaaatggaaagattcttgagaga 6850603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 6723502 - 6723373
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    |||||||||||||||||||| || | | ||||||||||||||||||||  |||||| |||||||||||| ||||||||||||||||||||||| |||| |    
T  6723502 caagggatctaaatggaacacttgaagcattatagccgcaaaactctgttccaatggtctctattccatcacagcctgaaatggaaagcttctcgagaaa 6723403  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
      | | || |||||||||||| ||||||||    
T  6723402 ggggaactgcccaagtggtggtaactggga 6723373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6881122 - 6881251
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    ||||||||||||||||||||| | ||||||||||||||  |||||||| |||||| || |||||||||| ||||| ||||||||||  ||||||||||||    
T  6881122 caagggatctaaatggaacatctgatgaattatagccgagaaactctgtaccaataatttctattccatcacagcttgaaatggaacacttcttgagaga 6881221  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
      ||| || |||||| ||||||||||||||    
T  6881222 gggaaactgcccaagcggtggcaactggga 6881251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 7748608 - 7748737
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    |||| |||||||||| ||||||| ||||||||||||| |||| ||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  7748608 caagagatctaaatgaaacatttgatgaattatagccacaaatctctgcaccaataatctctattccatcgcagcctgaaatggaaagcttcttgagaga 7748707  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
      | | || |||||||| ||| ||||||||    
T  7748708 gtggaactgcccaagtgatggtaactggga 7748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6915707 - 6915836
Alignment:
Q  1 caagggatctaaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagaga 100  Q
    |||||||| |||||| ||||||| ||||||| |||||  | ||||||| ||||||||| |||||||||| ||||||||||||  ||||||||||||||||    
T  6915707 caagggatttaaatgaaacatttgatgaattgtagccatagaactctgtaccaatgatttctattccatcacagcctgaaataaaaagcttcttgagaga 6915806  T
Q  101 acgaagctccccaagtggtggcaactggga 130  Q
      | | || ||||||||| |||||||||||    
T  6915807 ggggaactgcccaagtggcggcaactggga 6915836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 291
Target Start/End: Complemental strand, 6850487 - 6850327
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||| |||||||| |||||| ||||||||| ||||||||||||||| ||||||||  ||||   | ||||  |||||||   ||||||||| ||| ||||    
T  6850487 agtctttgatggttagcctcatgaggtttccatttggttgaagagcttccaagacagagacttttacttccattactgatttatccatttc-ctctattc 6850389  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcat 291  Q
     ||||| |||||||||||||||| ||||||||  ||||||| |||||||||| ||| |||||    
T  6850388 ctcgtatgacatacttaattcttctaaatgttctttatcttccaaatttgctgccacagcat 6850327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 5262399 - 5262518
Alignment:
Q  11 aaatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaacgaagctcc 110  Q
    |||||||||| || |||||||||||||  ||||||||  ||| |||||||||||||||| |||  ||||||| |||||||  || |||||  |||||| |    
T  5262399 aaatggaacagttgatgaattatagccataaaactcttcaccgatgatctctattccataacattctgaaatagaaagctctttaagagagggaagcttc 5262498  T
Q  111 ccaagtggtggcaactggga 130  Q
    ||||||||||||||| ||||    
T  5262499 ccaagtggtggcaaccggga 5262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 5279276 - 5279392
Alignment:
Q  12 aatggaacatttaatgaattatagccgcaaaactctgaaccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaacgaagctccc 111  Q
    ||||||||| || |||||||||||||  ||||||||  ||| || ||||||||||||| |||  ||||||| ||||||| ||| |||||  |||||| ||    
T  5279276 aatggaacagttgatgaattatagccataaaactcttcaccgataatctctattccatcacattctgaaatagaaagctccttaagagagggaagctgcc 5279375  T
Q  112 caagtggtggcaactgg 128  Q
    |||||||||| ||||||    
T  5279376 caagtggtggaaactgg 5279392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 6236547 - 6236626
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgag 209  Q
    |||||||||||  ||||||| |||| |||||||||||| ||||||||||||||| | |||||| ||||| ||||||||||    
T  6236547 agtcattgatgccgagcctcatgagatttctatttggtcgaagagcctccaagatcgagacacgtgctttagttactgag 6236626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 5248814 - 5248859
Alignment:
Q  53 aatgatctctattccatgacagcctgaaatggaaagcttcttgaga 98  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||    
T  5248814 aatgatctctattccatgacaacctgaaatataaagcttcttgaga 5248859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 5297401 - 5297473
Alignment:
Q  51 ccaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaacgaagctccccaagtggtggca 123  Q
    |||||| ||||||||||||| ||||||||||| ||||| |  |||||||| |  |||| ||||||||||||||    
T  5297401 ccaatgctctctattccatggcagcctgaaattgaaagttctttgagagagcagagctgcccaagtggtggca 5297473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 6795734 - 6795690
Alignment:
Q  239 catacttaattcttttaaatgtttcttatctttcaaatttgctcc 283  Q
    |||| ||||||||| || |||||||||||||||||||||||||||    
T  6795734 catatttaattcttctacatgtttcttatctttcaaatttgctcc 6795690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 7586787 - 7586831
Alignment:
Q  239 catacttaattcttttaaatgtttcttatctttcaaatttgctcc 283  Q
    |||| ||||||||| || |||||||||||||||||||||||||||    
T  7586787 catatttaattcttctacatgtttcttatctttcaaatttgctcc 7586831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 8470482 - 8470526
Alignment:
Q  239 catacttaattcttttaaatgtttcttatctttcaaatttgctcc 283  Q
    |||| ||||||||| || |||||||||||||||||||||||||||    
T  8470482 catatttaattcttctacatgtttcttatctttcaaatttgctcc 8470526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 8588563 - 8588610
Alignment:
Q  137 gatggtgagcctcgtgaggtttctatttggttgaagagcctccaagac 184  Q
    |||||| |||||| | | ||||||||||||||||||||||||||||||    
T  8588563 gatggtaagcctcttcaagtttctatttggttgaagagcctccaagac 8588610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 8570159 - 8570111
Alignment:
Q  136 tgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagac 184  Q
    |||||||||||||| | | ||| ||||||||||||||||| ||||||||    
T  8570159 tgatggtgagcctcttcaagttgctatttggttgaagagcatccaagac 8570111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 130 - 339
Target Start/End: Complemental strand, 35141576 - 35141367
Alignment:
Q  130 agtcattgatggtgagcctcgtgaggtttctatttggttgaagagcctccaagaccaagacacatgcttcagttactgagccatccatttcactccattc 229  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||  ||||||||||||| |||||||||||||| ||||| ||||||||    
T  35141576 agtcattgatggtgagcctcatgaggtttctatttggctgaagagactccaacactgagacacatgcttctgttactgagccatcgatttctctccattc 35141477  T
Q  230 atcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgctcccatagcatctgctggatcagccacatttttcaaccctgaaattcga 329  Q
    ||| ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||||||||    
T  35141476 atcatacgacacacttaattcttctaaatgtttcttatctttcaaatttgctgccataacatcagctggatcagccgcatttttcaaccctgaaattcga 35141377  T
Q  330 agccttcctt 339  Q
    ||||||||||    
T  35141376 agccttcctt 35141367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 825 - 905
Alignment:
Q  50 accaatgatctctattccatgacagcctgaaatggaaagcttcttgagagaacgaagctccccaagtggtggcaactggga 130  Q
    ||||||||||| |||||||| |||   |||||| ||||| |||||||||||| |||||| |||||||||||| || |||||    
T  825 accaatgatctttattccatcacaatatgaaatagaaagattcttgagagaaggaagctgcccaagtggtggaaaatggga 905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 1089 - 1126
Alignment:
Q  245 taattcttttaaatgtttcttatctttcaaatttgctc 282  Q
    |||||||| || ||||||||||||||||||||||||||    
T  1089 taattcttctacatgtttcttatctttcaaatttgctc 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 13513 - 13445
Alignment:
Q  212 atccatttcactccattcatcgtacgacatacttaattcttttaaatgtttcttatctttcaaatttgct 281  Q
    ||||||||| ||| |||| ||||| |||||||||||||||| ||||||||  ||||||| ||||||||||    
T  13513 atccatttc-ctctattcgtcgtatgacatacttaattcttctaaatgttctttatcttccaaatttgct 13445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 6574423 - 6574391
Alignment:
Q  249 tcttttaaatgtttcttatctttcaaatttgct 281  Q
    ||||||| |||||||||||||||||||||||||    
T  6574423 tcttttagatgtttcttatctttcaaatttgct 6574391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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