View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_38 (Length: 352)

Name: NF18947_low_38
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_38
NF18947_low_38
[»] chr6 (16 HSPs)
chr6 (46-336)||(21936408-21936698)
chr6 (111-336)||(21937758-21937983)
chr6 (128-332)||(24508664-24508868)
chr6 (108-336)||(20751922-20752150)
chr6 (48-190)||(12909533-12909675)
chr6 (48-190)||(12934640-12934782)
chr6 (109-251)||(11183031-11183173)
chr6 (209-336)||(11183072-11183199)
chr6 (166-336)||(24509892-24510064)
chr6 (46-102)||(21276120-21276176)
chr6 (239-336)||(21275965-21276062)
chr6 (46-102)||(20751881-20751936)
chr6 (181-251)||(21275991-21276061)
chr6 (267-308)||(12909533-12909574)
chr6 (267-308)||(12934640-12934681)
chr6 (102-151)||(21276091-21276140)
[»] chr3 (74 HSPs)
chr3 (46-336)||(29827595-29827885)
chr3 (181-336)||(49784678-49784833)
chr3 (146-251)||(49784704-49784809)
chr3 (46-151)||(18023914-18024020)
chr3 (43-102)||(6852750-6852809)
chr3 (43-102)||(10584656-10584715)
chr3 (259-310)||(18024082-18024133)
chr3 (43-102)||(33702397-33702456)
chr3 (44-102)||(8465097-8465155)
chr3 (46-102)||(4050155-4050211)
chr3 (46-102)||(4055289-4055345)
chr3 (46-102)||(5481289-5481345)
chr3 (46-102)||(6857856-6857912)
chr3 (46-102)||(10672739-10672795)
chr3 (46-102)||(10677852-10677908)
chr3 (43-102)||(1302042-1302101)
chr3 (229-336)||(8458504-8458611)
chr3 (46-100)||(269526-269580)
chr3 (48-102)||(20891496-20891550)
chr3 (239-336)||(4050000-4050097)
chr3 (239-336)||(33702514-33702611)
chr3 (46-102)||(8458659-8458715)
chr3 (50-102)||(10591100-10591152)
chr3 (46-102)||(31076201-31076257)
chr3 (46-102)||(31081308-31081364)
chr3 (192-251)||(20891354-20891413)
chr3 (43-102)||(49784893-49784952)
chr3 (262-336)||(10584796-10584870)
chr3 (239-336)||(1302159-1302256)
chr3 (239-336)||(4055134-4055231)
chr3 (239-336)||(5481403-5481500)
chr3 (239-336)||(10672853-10672950)
chr3 (261-310)||(20891354-20891403)
chr3 (239-336)||(31076317-31076414)
chr3 (239-336)||(31081422-31081519)
chr3 (43-102)||(5457814-5457868)
chr3 (48-151)||(18023324-18023427)
chr3 (192-251)||(20891281-20891340)
chr3 (181-251)||(1302160-1302230)
chr3 (181-251)||(4050026-4050096)
chr3 (181-251)||(4055160-4055230)
chr3 (262-336)||(8464942-8465016)
chr3 (181-251)||(10672854-10672924)
chr3 (181-251)||(10677967-10678037)
chr3 (181-251)||(31076318-31076388)
chr3 (181-251)||(31081423-31081493)
chr3 (239-336)||(5457926-5458023)
chr3 (239-336)||(6852867-6852964)
chr3 (239-336)||(6857970-6858067)
chr3 (239-336)||(10591210-10591307)
chr3 (239-336)||(10677966-10678063)
chr3 (258-310)||(20891281-20891333)
chr3 (44-120)||(31018015-31018090)
chr3 (239-310)||(49784763-49784834)
chr3 (181-251)||(5481404-5481474)
chr3 (181-251)||(6852868-6852938)
chr3 (181-251)||(6857971-6858041)
chr3 (181-251)||(8458530-8458600)
chr3 (181-251)||(10584774-10584844)
chr3 (181-251)||(10591211-10591281)
chr3 (150-192)||(20891354-20891396)
chr3 (102-144)||(20891474-20891516)
chr3 (181-251)||(33702515-33702585)
chr3 (102-151)||(4050126-4050175)
chr3 (102-151)||(4055260-4055309)
chr3 (102-151)||(5481325-5481374)
chr3 (102-151)||(6852789-6852838)
chr3 (102-151)||(6857892-6857941)
chr3 (102-151)||(8465068-8465117)
chr3 (102-151)||(10584695-10584744)
chr3 (102-151)||(10591132-10591181)
chr3 (102-151)||(10672775-10672824)
chr3 (102-151)||(10677888-10677937)
chr3 (102-151)||(49784864-49784913)
[»] chr5 (28 HSPs)
chr5 (44-336)||(35368621-35368913)
chr5 (46-251)||(43540564-43540768)
chr5 (102-251)||(13556141-13556290)
chr5 (181-317)||(2023164-2023300)
chr5 (206-314)||(43540665-43540772)
chr5 (206-336)||(13556186-13556316)
chr5 (46-151)||(2024362-2024467)
chr5 (181-310)||(43379601-43379730)
chr5 (150-251)||(2023171-2023272)
chr5 (46-102)||(9872225-9872281)
chr5 (46-102)||(9877340-9877396)
chr5 (239-310)||(2023230-2023301)
chr5 (46-101)||(39909306-39909361)
chr5 (46-144)||(4555920-4556018)
chr5 (166-251)||(43379601-43379686)
chr5 (46-102)||(39904192-39904248)
chr5 (46-102)||(13556105-13556161)
chr5 (102-146)||(24091825-24091869)
chr5 (181-251)||(9872340-9872410)
chr5 (181-251)||(9877455-9877525)
chr5 (181-251)||(39909176-39909246)
chr5 (239-336)||(9872339-9872436)
chr5 (239-336)||(9877454-9877551)
chr5 (239-336)||(39909150-39909247)
chr5 (102-151)||(9872261-9872310)
chr5 (102-151)||(9877376-9877425)
chr5 (51-100)||(24091794-24091843)
chr5 (102-151)||(39904163-39904212)
[»] chr1 (40 HSPs)
chr1 (50-336)||(10186307-10186593)
chr1 (52-251)||(19311031-19311230)
chr1 (48-251)||(13654527-13654730)
chr1 (59-251)||(1188029-1188221)
chr1 (59-265)||(10185893-10186099)
chr1 (48-249)||(35653036-35653237)
chr1 (152-318)||(21431509-21431675)
chr1 (46-217)||(1188218-1188389)
chr1 (46-320)||(35626328-35626591)
chr1 (206-336)||(19311005-19311135)
chr1 (206-336)||(13654501-13654631)
chr1 (209-334)||(1188005-1188130)
chr1 (102-336)||(43358935-43359169)
chr1 (47-151)||(17414304-17414408)
chr1 (102-251)||(16051403-16051552)
chr1 (224-338)||(16051375-16051489)
chr1 (206-310)||(10185907-10186011)
chr1 (150-251)||(21431566-21431667)
chr1 (207-336)||(35653136-35653265)
chr1 (63-192)||(44523889-44524017)
chr1 (46-133)||(21430777-21430863)
chr1 (45-143)||(3696110-3696208)
chr1 (46-102)||(28574644-28574700)
chr1 (45-102)||(3468415-3468472)
chr1 (45-102)||(43359149-43359206)
chr1 (46-102)||(28598656-28598712)
chr1 (267-325)||(44523974-44524032)
chr1 (239-336)||(3468260-3468357)
chr1 (239-336)||(28574489-28574586)
chr1 (239-336)||(28598501-28598598)
chr1 (181-251)||(28574515-28574585)
chr1 (181-251)||(28598527-28598597)
chr1 (229-310)||(3701370-3701451)
chr1 (150-214)||(10185885-10185949)
chr1 (181-251)||(3468286-3468356)
chr1 (102-151)||(28574615-28574664)
chr1 (102-151)||(28598627-28598676)
chr1 (206-251)||(44523972-44524017)
chr1 (209-277)||(1188217-1188285)
chr1 (167-251)||(3701367-3701451)
[»] scaffold0005 (2 HSPs)
scaffold0005 (46-251)||(173561-173766)
scaffold0005 (206-336)||(173535-173665)
[»] chr4 (39 HSPs)
chr4 (46-251)||(14643526-14643731)
chr4 (46-251)||(47071609-47071814)
chr4 (46-251)||(22118925-22119130)
chr4 (44-251)||(30019636-30019833)
chr4 (105-333)||(25618089-25618316)
chr4 (117-336)||(34279305-34279525)
chr4 (46-336)||(3409329-3409620)
chr4 (110-251)||(54859022-54859163)
chr4 (206-336)||(14643627-14643757)
chr4 (50-319)||(18716689-18716958)
chr4 (206-336)||(54859059-54859190)
chr4 (183-336)||(32429152-32429305)
chr4 (44-251)||(34601823-34602024)
chr4 (206-336)||(22118897-22119029)
chr4 (219-336)||(30019743-30019859)
chr4 (181-336)||(18671022-18671177)
chr4 (50-319)||(18737362-18737634)
chr4 (146-251)||(32429174-32429279)
chr4 (206-314)||(47071605-47071713)
chr4 (150-251)||(18671048-18671149)
chr4 (46-102)||(35091262-35091318)
chr4 (44-102)||(35096375-35096433)
chr4 (46-102)||(3424114-3424170)
chr4 (239-311)||(3424228-3424300)
chr4 (46-102)||(32429034-32429090)
chr4 (239-310)||(18671107-18671178)
chr4 (208-338)||(34601928-34602052)
chr4 (150-223)||(3424257-3424330)
chr4 (239-336)||(35091107-35091204)
chr4 (239-336)||(35096220-35096317)
chr4 (181-283)||(3424229-3424331)
chr4 (181-251)||(35091133-35091203)
chr4 (181-251)||(35096246-35096316)
chr4 (102-151)||(32429070-32429119)
chr4 (46-91)||(34279254-34279299)
chr4 (264-304)||(34601925-34601965)
chr4 (102-161)||(34128159-34128218)
chr4 (102-151)||(35091233-35091282)
chr4 (284-336)||(34128220-34128272)
[»] scaffold0006 (2 HSPs)
scaffold0006 (48-251)||(144288-144491)
scaffold0006 (206-336)||(144262-144392)
[»] chr2 (24 HSPs)
chr2 (108-336)||(716446-716674)
chr2 (46-251)||(42780391-42780596)
chr2 (220-336)||(42780365-42780481)
chr2 (171-336)||(20892197-20892361)
chr2 (59-153)||(20892111-20892205)
chr2 (239-336)||(30283365-30283462)
chr2 (46-102)||(14917183-14917239)
chr2 (46-102)||(17720000-17720056)
chr2 (46-102)||(45120734-45120790)
chr2 (44-102)||(30283249-30283307)
chr2 (239-336)||(45120579-45120676)
chr2 (46-102)||(17720327-17720383)
chr2 (46-102)||(39178946-39179002)
chr2 (265-336)||(16286013-16286084)
chr2 (181-251)||(14917298-14917368)
chr2 (262-336)||(17720464-17720538)
chr2 (239-336)||(14917297-14917394)
chr2 (1-46)||(23481924-23481969)
chr2 (147-234)||(20892232-20892319)
chr2 (181-251)||(17720442-17720512)
chr2 (181-251)||(30283366-30283436)
chr2 (181-251)||(45120605-45120675)
chr2 (102-151)||(14917219-14917268)
chr2 (102-151)||(17720363-17720412)
[»] chr8 (35 HSPs)
chr8 (49-251)||(18608435-18608636)
chr8 (162-338)||(25953012-25953189)
chr8 (208-336)||(18608534-18608662)
chr8 (104-251)||(43956689-43956836)
chr8 (45-336)||(10340697-10340979)
chr8 (46-201)||(1782083-1782237)
chr8 (46-100)||(14314712-14314766)
chr8 (208-336)||(43956734-43956862)
chr8 (45-102)||(43956650-43956707)
chr8 (46-102)||(14318416-14318472)
chr8 (46-102)||(26981676-26981732)
chr8 (46-102)||(26986790-26986846)
chr8 (46-102)||(34108578-34108634)
chr8 (1-46)||(15207147-15207192)
chr8 (239-336)||(34108423-34108520)
chr8 (46-102)||(18493978-18494034)
chr8 (239-336)||(14314826-14314923)
chr8 (239-336)||(14318530-14318627)
chr8 (239-336)||(26981790-26981887)
chr8 (239-336)||(26986904-26987001)
chr8 (284-336)||(1782010-1782062)
chr8 (239-310)||(18494092-18494163)
chr8 (181-251)||(14314827-14314897)
chr8 (181-251)||(14318531-14318601)
chr8 (181-251)||(26986905-26986975)
chr8 (1-46)||(15201390-15201435)
chr8 (85-148)||(25952305-25952368)
chr8 (181-251)||(18494093-18494163)
chr8 (181-251)||(26981791-26981861)
chr8 (181-251)||(34108449-34108519)
chr8 (102-151)||(14318452-14318501)
chr8 (102-151)||(18494014-18494063)
chr8 (102-151)||(26981712-26981761)
chr8 (102-151)||(26986826-26986875)
chr8 (102-151)||(34108549-34108598)
[»] chr7 (40 HSPs)
chr7 (46-175)||(37459703-37459832)
chr7 (46-123)||(2248853-2248930)
chr7 (241-336)||(5440217-5440312)
chr7 (241-336)||(5449227-5449322)
chr7 (46-102)||(12852023-12852079)
chr7 (46-102)||(12857136-12857192)
chr7 (46-102)||(26051368-26051424)
chr7 (46-102)||(26056481-26056537)
chr7 (46-102)||(26060727-26060783)
chr7 (46-102)||(26065840-26065896)
chr7 (239-336)||(14610521-14610618)
chr7 (46-100)||(4181276-4181330)
chr7 (239-336)||(12851868-12851965)
chr7 (239-336)||(12856981-12857078)
chr7 (239-336)||(26051213-26051310)
chr7 (239-336)||(26056326-26056423)
chr7 (239-336)||(26060572-26060669)
chr7 (239-336)||(26065685-26065782)
chr7 (268-336)||(4181347-4181415)
chr7 (267-338)||(37459806-37459877)
chr7 (209-251)||(4181347-4181389)
chr7 (181-251)||(12857007-12857077)
chr7 (181-251)||(14610547-14610617)
chr7 (181-251)||(26051239-26051309)
chr7 (181-251)||(26056352-26056422)
chr7 (181-251)||(26060598-26060668)
chr7 (181-251)||(26065711-26065781)
chr7 (45-91)||(35352120-35352166)
chr7 (182-251)||(5440217-5440286)
chr7 (182-251)||(5449227-5449296)
chr7 (181-251)||(12851894-12851964)
chr7 (102-151)||(12857107-12857156)
chr7 (102-151)||(14610647-14610696)
chr7 (102-151)||(26051339-26051388)
chr7 (102-151)||(26056452-26056501)
chr7 (102-151)||(26060698-26060747)
chr7 (102-151)||(26065811-26065860)
chr7 (181-234)||(35352236-35352289)
chr7 (132-192)||(4181329-4181389)
chr7 (239-315)||(35352235-35352311)
[»] scaffold0223 (3 HSPs)
scaffold0223 (46-102)||(1820-1876)
scaffold0223 (239-336)||(1934-2031)
scaffold0223 (181-251)||(1935-2005)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 46 - 336
Target Start/End: Original strand, 21936408 - 21936698
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |    
T  21936408 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactctttatggaaatcttttatatacatttg 21936507  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||| ||    
T  21936508 aacctttggcaaatgggtgcttaatgaacctttgcattgattcaagtttatatgatcatgacctttggcaaaggggtgtttagtgaaccttagaatttat 21936607  T
Q  246 tcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||| || |||||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  21936608 tcaagtgtatatgatcataacctttggcaaaaaggtgcttaataaaccataacattgattcaagtcaaaggggtgttttctctcatgtgaa 21936698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 111 - 336
Target Start/End: Complemental strand, 21937983 - 21937758
Alignment:
Q  111 tgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctt 210  Q
    ||||||||||||||| ||| |||  ||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  21937983 tgtaactcttcatgaaaatatttcgtatacattggaacatttagcaaaggggtggttaatgaacatttgcattgattcaagtgtatatgatcatgacctt 21937884  T
Q  211 tggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    ||| ||||||||| ||| | ||| ||| ||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  21937883 tggaaaaggggtgtttaattaactttatcattgattcaagtgtatatgatcataacctttggcaaaagggtgtttaatgaaccatcacattgattcaagt 21937784  T
Q  311 caaaggggtattttctatcatgtgaa 336  Q
    |||||||||||||||| |||||||||    
T  21937783 caaaggggtattttctctcatgtgaa 21937758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 128 - 332
Target Start/End: Original strand, 24508664 - 24508868
Alignment:
Q  128 atcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgctta 227  Q
    |||||| ||||| |||| ||||||||| ||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||    
T  24508664 atctttcatatatattgaaacatttggtaaatgggcgcttaataaacctttgcattgattcaagtgtatatgatcatgacctttggtaaaggggtgttta 24508763  T
Q  228 gtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttcta 327  Q
     |||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||     
T  24508764 atgaaccttagcattaattcaagtgtataagatcataacctttggcaaaagggtgcttaatgaaccataacattgattcaagtcaaaggggtgttttctc 24508863  T
Q  328 tcatg 332  Q
    |||||    
T  24508864 tcatg 24508868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 108 - 336
Target Start/End: Original strand, 20751922 - 20752150
Alignment:
Q  108 agttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgac 207  Q
    ||||||||||||||||||||| |||| |||||||||  ||| ||| ||||| ||||||||||| |||||| | |||| ||||||||||||| || || ||    
T  20751922 agttgtaactcttcatgagaacctttcatatacattataacctttagcaaatgggtgcttaataaaccttagcattggttcaagtgtatattattataac 20752021  T
Q  208 ctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattca 307  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||| || |  ||||| ||||| ||||| |||| ||||||||||||||||||||||||    
T  20752022 ctttgacaaaggggtgtttaatgaaccttagcattgattcaagtgtatatggccataacctttgacaaaatggtgcttaatgaaccataacattgattca 20752121  T
Q  308 agtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||| | || |||||| |||||||||    
T  20752122 agtcaaatgagtgttttctctcatgtgaa 20752150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 12909675 - 12909533
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    ||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  12909675 ttggtgatttctaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaa 12909576  T
Q  148 catttggcaaaagggtgcttaatgaacctttgaattgattcaa 190  Q
    | |||||||||| |||| |||||||||||| | ||||||||||    
T  12909575 cctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12909533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 12934782 - 12934640
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  12934782 ttggtgatttccaaaataatggaatcactctagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaa 12934683  T
Q  148 catttggcaaaagggtgcttaatgaacctttgaattgattcaa 190  Q
    | |||||||||| |||| |||||||||||| | ||||||||||    
T  12934682 cctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12934640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 109 - 251
Target Start/End: Original strand, 11183031 - 11183173
Alignment:
Q  109 gttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacc 208  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||| |||| ||||||||||||| |  ||||||||||||||||||||||| |||    
T  11183031 gttgtaactcttcatggaaatctttcatatacattggaacatttggcaaaggggtacttaatgaaccttagccttgattcaagtgtatatgatcataacc 11183130  T
Q  209 tttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||| ||||||| || ||| |||||| || || ||||||||||    
T  11183131 tttgacaaagggatgtttaatgaaccataacactgattcaagt 11183173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 209 - 336
Target Start/End: Original strand, 11183072 - 11183199
Alignment:
Q  209 tttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaa 308  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||| || |||||||| ||||| |||| || ||||||||||||||||||| ||||||||    
T  11183072 tttggcaaaggggtacttaatgaaccttagccttgattcaagtgtatatgatcataacctttgacaaagggatgtttaatgaaccataacactgattcaa 11183171  T
Q  309 gtcaaaggggtattttctatcatgtgaa 336  Q
    |||||| |||| | ||||  ||||||||    
T  11183172 gtcaaatgggtgtgttctcccatgtgaa 11183199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 336
Target Start/End: Complemental strand, 24510064 - 24509892
Alignment:
Q  166 ttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagat---ca 262  Q
    ||||||||||||   ||| |||||||||||||| ||||||| ||||| |||| ||||  ||| ||||||||| |||| |||||||||| || |||   ||    
T  24510064 ttaatgaaccttaacattaattcaagtgtatataatcatgatctttgacaaaagggta-ttaatgaaccttaacattaattcaagtgtatatgatgatca 24509966  T
Q  263 taatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||  |||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  24509965 taacatttgacaaaagtgtgtttaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaa 24509892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 21276176 - 21276120
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  21276176 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 21276120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 21276062 - 21275965
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  21276062 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 21275965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 20751881 - 20751936
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||    
T  20751881 tgttggtgatttccaaaataatggattcactttag-atcaaaagttgtaactcttca 20751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 21276061 - 21275991
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  21276061 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 21275991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 12909574 - 12909533
Alignment:
Q  267 ctttggcaaaagggtgtttaatgaaccataacattgattcaa 308  Q
    ||||||||||| ||||||||||||||| || |||||||||||    
T  12909574 ctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12909533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 12934681 - 12934640
Alignment:
Q  267 ctttggcaaaagggtgtttaatgaaccataacattgattcaa 308  Q
    ||||||||||| ||||||||||||||| || |||||||||||    
T  12934681 ctttggcaaaaaggtgtttaatgaaccttagcattgattcaa 12934640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 21276140 - 21276091
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  21276140 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 21276091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 74)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 46 - 336
Target Start/End: Complemental strand, 29827885 - 29827595
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||| |||||    
T  29827885 tgttggtgatttccaaaagaatggaatcactttagaatcaaaagttgtaactcttcaccaagagttgtaattctgcatgggaatctttcatatagattgg 29827786  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| |||||||||  |||| |||||||||||||| ||||||||||||||||||||| || || |||| ||||  |||||||| |||||||||||||||||    
T  29827785 aacctttggcaaacaggtgtttaatgaacctttgcattgattcaagtgtatatgattataacatttgacaaattggtgcttaatgaaccttagcattgat 29827686  T
Q  246 tcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||| || | |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  29827685 tcaagtgtgtatggtcataatctttggcaaaatggtgcttaatgaatcataacattgattcaagtcaaaggggtgttttctatcatgtgaa 29827595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 181 - 336
Target Start/End: Complemental strand, 49784833 - 49784678
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaaggg 280  Q
    ||||||||||||||||||| | || || ||||||||| |||||| || | |||| || ||||||||||||||| || |||||||| |||||||||| |||    
T  49784833 attgattcaagtgtatatggttataacatttggcaaaagggtgcataataaaccatatcattgattcaagtgtatatgatcataagctttggcaaatggg 49784734  T
Q  281 tgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    || |||||||| |||||||||||||||||||||| | || |||||| |||||||||    
T  49784733 tgcttaatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaa 49784678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 49784809 - 49784704
Alignment:
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    |||||||||||||||||||| |||| |||| |   |||||||||||||||||||||||| | |||||||||| ||||||||| |||| | || |||||||    
T  49784809 aacatttggcaaaagggtgcataataaaccatatcattgattcaagtgtatatgatcataagctttggcaaatgggtgcttaatgaatcataacattgat 49784710  T
Q  246 tcaagt 251  Q
    ||||||    
T  49784709 tcaagt 49784704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 18023914 - 18024020
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaaga-gttgtaactcttcatgagaatcttttatatacattg 144  Q
    |||||||||||| |||||||||||||| |||||| || ||||||||||||||  ||||||| | |||||||||||||||  |||||  | ||||||||||    
T  18023914 tgttggtgatttccaaaataatggaatcactttataaccaaaagttgtaactaatcaccaaaaggttgtaactcttcataggaatcaatcatatacattg 18024013  T
Q  145 gaacatt 151  Q
    |||||||    
T  18024014 gaacatt 18024020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 6852750 - 6852809
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  6852750 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 6852809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 10584656 - 10584715
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10584656 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10584715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 18024082 - 18024133
Alignment:
Q  259 atcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18024082 atcataatctttggcaaaagggtgtttaataaaccataacattgattcaagt 18024133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 33702397 - 33702456
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  33702397 ttatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 33702456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 8465155 - 8465097
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  8465155 tatgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 8465097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 4050211 - 4050155
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  4050211 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 4050155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 4055345 - 4055289
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  4055345 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 4055289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 5481289 - 5481345
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  5481289 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 5481345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 6857856 - 6857912
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  6857856 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 6857912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 10672739 - 10672795
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10672739 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10672795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 10677852 - 10677908
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10677852 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 1302042 - 1302101
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  1302042 ttatgttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 1302101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 8458611 - 8458504
Alignment:
Q  229 tgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctat 328  Q
    |||||| || ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| ||| |||||| |    
T  8458611 tgaaccataacattgattcaagtatatatggttataacctttggcaaaagggtggttaatgaatcatggcattgattcaagttaaagaggtgttttctct 8458512  T
Q  329 catgtgaa 336  Q
    ||||||||    
T  8458511 catgtgaa 8458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 269580 - 269526
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 100  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  269580 tgttggtgatttccaaaataatggaatcactttagaatcaaaagttgtagctctt 269526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 20891550 - 20891496
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  20891550 ttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 20891496  T

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Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 4050097 - 4050000
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| ||| |||||| |||||||||    
T  4050097 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaa 4050000  T

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Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 33702514 - 33702611
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | |||| | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  33702514 cattgattcaagtatataaggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 33702611  T

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Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 8458715 - 8458659
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  8458715 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttca 8458659  T

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Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 10591100 - 10591152
Alignment:
Q  50 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  10591100 ggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 10591152  T

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Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 31076201 - 31076257
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||    
T  31076201 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttca 31076257  T

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Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 31081308 - 31081364
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| ||||||||    
T  31081308 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtgactcttca 31081364  T

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Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 20891413 - 20891354
Alignment:
Q  192 tgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||||| ||| |||||||||||| ||||||||| |||||| ||||||||||||||||    
T  20891413 tgtatatgaccataacctttggcaaaagggtgcttaatgaaccatagcattgattcaagt 20891354  T

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Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 49784952 - 49784893
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||| ||||||||| |||| |||||| || |||||||||||||||||||    
T  49784952 ttatgttggtgatttccaaaataatagaatcactttaaaaccaaaagttgtaactcttca 49784893  T

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Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 10584796 - 10584870
Alignment:
Q  262 ataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| ||| |||||| |||||||||    
T  10584796 ataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaa 10584870  T

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Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 1302159 - 1302256
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  1302159 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 1302256  T

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Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 4055231 - 4055134
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  4055231 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 4055134  T

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Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 5481403 - 5481500
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| |||||||||||||| |||  |||  ||||| |||||||||    
T  5481403 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaa 5481500  T

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Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 10672853 - 10672950
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  10672853 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 10672950  T

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Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 20891403 - 20891354
Alignment:
Q  261 cataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    ||||| |||||||||||||||| ||||||||||||| |||||||||||||    
T  20891403 cataacctttggcaaaagggtgcttaatgaaccatagcattgattcaagt 20891354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 31076317 - 31076414
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  31076317 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 31076414  T

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Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 31081422 - 31081519
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  31081422 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 31081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 5457814 - 5457868
Alignment:
Q  43 ttatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||| |||||||||||||     ||||||||||||||||||||||||||    
T  5457814 ttatgttggtgatttccaaaataatggaa-----ttagaatcaaaagttgtaactcttca 5457868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 18023324 - 18023427
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    |||||||||| |||||||||||||| ||||||||||  |||||||||| |||| ||||  | ||| |||| |||||  ||||| || ||||| ||| |||    
T  18023324 ttggtgatttccaaaataatggaatcactttagaattgaaagttgtaagtctttaccagaaattgcaacttttcataggaatcattcatatatattagaa 18023423  T
Q  148 catt 151  Q
    ||||    
T  18023424 catt 18023427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 20891340 - 20891281
Alignment:
Q  192 tgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||||||||| |||||||||||| || |||||| |||||| || |||||||||||||    
T  20891340 tgtatatgatcataacctttggcaaatggttgcttaatgaaccatatcattgattcaagt 20891281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 1302160 - 1302230
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  1302160 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 1302230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 4050096 - 4050026
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  4050096 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 4050026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 4055230 - 4055160
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  4055230 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 4055160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 8465016 - 8464942
Alignment:
Q  262 ataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||| ||||||||||| |||| |||||||| ||| |||||||||||||| |||| |||  ||||| |||||||||    
T  8465016 ataacctttggcaaaatggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaa 8464942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 10672854 - 10672924
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  10672854 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 10672924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 10677967 - 10678037
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  10677967 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 10678037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 31076318 - 31076388
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  31076318 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 31076388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 31081423 - 31081493
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  31081423 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 31081493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 5457926 - 5458023
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| | |||||||||||||| |||||||| ||| |||||||||||||| |||  |||  ||||| |||||||||    
T  5457926 cattgattcaagtatatatggttataacccttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaa 5458023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 6852867 - 6852964
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| || ||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  6852867 cattgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 6852964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 6857970 - 6858067
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| || ||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  6857970 cattgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcatggcattgattcaagttaaagaggtgatttctctcatgtgaa 6858067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 10591210 - 10591307
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||| ||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  10591210 cattgattcaagtatatatggttataacctttggtaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 10591307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 10677966 - 10678063
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  |||  ||||| |||||||||    
T  10677966 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaaaaggtgctttctttcatgtgaa 10678063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 20891333 - 20891281
Alignment:
Q  258 gatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    |||||||| |||||||||| || || ||||||||||||| |||||||||||||    
T  20891333 gatcataacctttggcaaatggttgcttaatgaaccatatcattgattcaagt 20891281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 31018015 - 31018090
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactctt 120  Q
    ||||||||| ||||| |||||||| |||| | ||||||||  ||||||| || ||||||| ||||||||||||||||    
T  31018015 tatgttggtaatttttaaaataatagaatca-tttagaatataaagttgcaattcttcactaagagttgtaactctt 31018090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 49784834 - 49784763
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    ||||||||||||||| || | | ||||  |||||||||||||||  |||| ||||||| |||||||||||||    
T  49784834 cattgattcaagtgtatatggttataacatttggcaaaagggtgcataataaaccatatcattgattcaagt 49784763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 5481404 - 5481474
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  5481404 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 5481474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 6852868 - 6852938
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||  |||| | | ||||||||||||||    
T  6852868 attgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcatggcattgattcaagt 6852938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 6857971 - 6858041
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||  |||| | | ||||||||||||||    
T  6857971 attgattcaagtatatatggttataacctttggcaaaagggtgcttgatgaatcatggcattgattcaagt 6858041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 8458600 - 8458530
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||| ||| |||| | | ||||||||||||||    
T  8458600 attgattcaagtatatatggttataacctttggcaaaagggtggttaatgaatcatggcattgattcaagt 8458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 10584774 - 10584844
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||| | |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  10584774 attgattcaaatatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 10584844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 10591211 - 10591281
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||| ||| ||||||||| |||| | | ||||||||||||||    
T  10591211 attgattcaagtatatatggttataacctttggtaaaagggtgcttaatgaatcatggcattgattcaagt 10591281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 20891396 - 20891354
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagt 192  Q
    |||||||||||||||||||||||||| | | ||||||||||||    
T  20891396 tttggcaaaagggtgcttaatgaaccatagcattgattcaagt 20891354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 20891516 - 20891474
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattg 144  Q
    ||||| ||||||||||||||||||||||| || ||||||||||    
T  20891516 accaaaagttgtaactcttcatgagaatcattcatatacattg 20891474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 33702515 - 33702585
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||| | | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  33702515 attgattcaagtatataaggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 33702585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 4050175 - 4050126
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  4050175 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 4050126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 4055309 - 4055260
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  4055309 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 4055260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 5481325 - 5481374
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  5481325 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 5481374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 6852789 - 6852838
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  6852789 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 6852838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 6857892 - 6857941
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  6857892 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 6857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 8465117 - 8465068
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  8465117 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 8465068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 10584695 - 10584744
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10584695 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10584744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 10591132 - 10591181
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10591132 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10591181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 10672775 - 10672824
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10672775 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 10677888 - 10677937
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  10677888 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 10677937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 49784913 - 49784864
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| |||||||||||||||||  |||| || |||||||||||||||||    
T  49784913 accaaaagttgtaactcttcatggaaatcattcatatacattggaacatt 49784864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 44 - 336
Target Start/End: Original strand, 35368621 - 35368913
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 143  Q
    ||||||||| ||||  |||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |||||||||    
T  35368621 tatgttggtaatttctaaaagaatggaatcactttagaatcaaaagttgtaacttttcatcaagagttgtaactctttatgagaatctttcatatacatt 35368720  T
Q  144 ggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattg 243  Q
    ||||| ||||||||| | |||||||||||||||| | ||||||| ||||||||||||| || ||||||| ||||| |||||||| |||||||||||||||    
T  35368721 ggaacctttggcaaatgagtgcttaatgaaccttagcattgatttaagtgtatatgattataacctttgacaaagaggtgcttaatgaaccttagcattg 35368820  T
Q  244 attcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||| || ||||||||  ||||  |||| ||||||||||||| |||||||||||||||||||||| | || |||||| |||||||||    
T  35368821 attcaagtgtatatgatcataacatttgataaaaaggtgtttaatgaatcataacattgattcaagtcaaatgagtgttttctctcatgtgaa 35368913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 43540564 - 43540768
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||||||||||||||||||||  |||  || |||||||||||    
T  43540564 tgttggtgatttccaaaataattgaatcaatttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatggtaattattcatatacattgg 43540663  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||  |||||||| |||||| || ||||||     
T  43540664 aacctttggcaaaggggtgcttaatgaatcttagtattgattcaagtgtatatgatcataacctttgacaaa-aggtgcttaatgaaccataacattgac 43540762  T
Q  246 tcaagt 251  Q
    ||||||    
T  43540763 tcaagt 43540768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 13556141 - 13556290
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 201  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |||||||||||||| |||| |||||||||||||||||||||    
T  13556141 accaagagttgtaactcttcatgggaatctttcatatacattggaacctttggcaaataggtgcttaatgaacatttgcattgattcaagtgtatatgat 13556240  T
Q  202 catgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
     || ||||||||||||  |||||||| |||| | ||||||||||||||||    
T  13556241 tataacctttggcaaaaaggtgcttaatgaatcatagcattgattcaagt 13556290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 2023300 - 2023164
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaaggg 280  Q
    |||||||||||||| |||| | || |||||||||||| ||||||||| |||| | || ||||||||||||||| || |||||||| ||||| |||| |||    
T  2023300 attgattcaagtgtgtatggttataacctttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaatggg 2023201  T
Q  281 tgtttaatgaaccataacattgattcaagtcaaaggg 317  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2023200 tgtttaatgaatcataacattgattcaagtcaaaggg 2023164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 314
Target Start/End: Original strand, 43540665 - 43540772
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||||| || |||||||| ||||| ||||| |||| |||||||||||||||||||| |    
T  43540665 acctttggcaaaggggtgcttaatgaatcttagtattgattcaagtgtatatgatcataacctttgacaaaa-ggtgcttaatgaaccataacattgact 43540763  T
Q  306 caagtcaaa 314  Q
    |||||||||    
T  43540764 caagtcaaa 43540772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 13556186 - 13556316
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    ||||||||||||  |||||||| ||||| || |||||||||||||||| || ||| |||| ||||||||||| |||| |||||||| |||| ||||||||    
T  13556186 acctttggcaaataggtgcttaatgaacatttgcattgattcaagtgtatatgattataacctttggcaaaaaggtgcttaatgaatcatagcattgatt 13556285  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| ||||  ||||| |||||||||    
T  13556286 caagtcaaatgggtgctttctctcatgtgaa 13556316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 151
Target Start/End: Complemental strand, 2024467 - 2024362
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| | |||| ||||||||||||||||||||| | ||| | || |||||||||||    
T  2024467 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcacgggaaccattcatatacattgg 2024368  T
Q  146 aacatt 151  Q
    ||||||    
T  2024367 aacatt 2024362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 43379730 - 43379601
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaaggg 280  Q
    ||||||| ||| |||||||||||| || ||||| |||| | || ||| |||||| |||||||||||||||||| || |||||||| |||||| ||||| |    
T  43379730 attgatttaagcgtatatgatcataacttttggtaaagtgatgtttaatgaaccgtagcattgattcaagtgtatatgatcataaactttggtaaaagag 43379631  T
Q  281 tgtttaatgaaccataacattgattcaagt 310  Q
    || ||| |||| ||||||||||||||||||    
T  43379630 tgcttagtgaatcataacattgattcaagt 43379601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 2023272 - 2023171
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaa 249  Q
    |||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||||| |||| ||||| ||| |||| | || |||||||||||    
T  2023272 tttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaatgggtgtttaatgaatcataacattgattcaa 2023173  T
Q  250 gt 251  Q
    ||    
T  2023172 gt 2023171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 9872225 - 9872281
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  9872225 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 9872281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 9877340 - 9877396
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  9877340 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 9877396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 2023301 - 2023230
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    ||||||||||||||| || | | |||| |||||||||||||||| |||||||| ||||||||||||||||||    
T  2023301 cattgattcaagtgtgtatggttataacctttggcaaaagggtgcttaatgaatcataacattgattcaagt 2023230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 39909361 - 39909306
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttc 101  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||    
T  39909361 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttc 39909306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 4556018 - 4555920
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattg 144  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||| || | ||| |||| || ||||||| |  |||| || ||||||||||    
T  4556018 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactttttatcaaaagttatacctcttcacggaaatcattcatatacattg 4555920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 43379686 - 43379601
Alignment:
Q  166 ttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||| | | |||||||||||||||||||||||| | |||||| ||| | |||||||||||| | || |||||||||||||    
T  43379686 ttaatgaaccgtagcattgattcaagtgtatatgatcataaactttggtaaaagagtgcttagtgaatcataacattgattcaagt 43379601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 39904248 - 39904192
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||    
T  39904248 tgttggtgatttccaaaataattgaatcactttagaaccaaaagttgtaactcttca 39904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 13556105 - 13556161
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| |||||| || ||| |||||||||||||||    
T  13556105 tgttggtgatttccaaaataatggaatcactttaaaaccaagagttgtaactcttca 13556161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 24091825 - 24091869
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattgga 146  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||    
T  24091825 accaagagttgtaactctttatgagaatctttcatatacattgga 24091869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 9872340 - 9872410
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  9872340 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 9872410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 9877455 - 9877525
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  9877455 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 9877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 39909246 - 39909176
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  39909246 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 39909176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 9872339 - 9872436
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  |||  ||||| |||||||||    
T  9872339 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaa 9872436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 9877454 - 9877551
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  |||  ||||| |||||||||    
T  9877454 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaa 9877551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 39909247 - 39909150
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  |||  ||||| |||||||||    
T  39909247 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgctttctctcatgtgaa 39909150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 9872261 - 9872310
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  9872261 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 9872310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 9877376 - 9877425
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  9877376 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 9877425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 24091794 - 24091843
Alignment:
Q  51 gtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 100  Q
    ||||||| ||||||||| |||| ||||||||| ||| |||||||||||||    
T  24091794 gtgatttccaaaataatagaatcactttagaaccaagagttgtaactctt 24091843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 39904212 - 39904163
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  39904212 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 39904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 50 - 336
Target Start/End: Original strand, 10186307 - 10186593
Alignment:
Q  50 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaaca 149  Q
    |||| ||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||     
T  10186307 ggtgctttccaaaataatggaatcactttagactcaaaagttttaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattgaaact 10186406  T
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaa 249  Q
    ||| ||||| ||||||||||||| ||||   ||||||| |||| |||||| |  | || ||||||||| ||||||||| |||||| ||||||||||||||    
T  10186407 tttagcaaaggggtgcttaatgagccttatcattgattgaagtttatatggttgtaacttttggcaaaagggtgcttaatgaaccatagcattgattcaa 10186506  T
Q  250 gtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||| || |||||||| ||||| |||| ||||| ||||||||||||| ||||| ||||||||||| ||||  ||||| |||||||||    
T  10186507 gtgtatatgatcataacctttgacaaaggggtgcttaatgaaccatagcattggttcaagtcaaatgggtgctttctctcatgtgaa 10186593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 52 - 251
Target Start/End: Complemental strand, 19311230 - 19311031
Alignment:
Q  52 tgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    |||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||    
T  19311230 tgatttccaaaataatggaatcactttataaccaaaagttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattggaacctt 19311131  T
Q  152 tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||| |||||| ||||||||||| | |||||||||||||||||||||||| |||||||| ||| ||||||||| |||||  || |||||||||||||    
T  19311130 tggcaaaggggtgcataatgaaccttagcattgattcaagtgtatatgatcataacctttggtaaaagggtgcttaatgaactataacattgattcaagt 19311031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 13654730 - 13654527
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  13654730 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattggaa 13654631  T
Q  148 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattc 247  Q
    | |||||||||  |||||||||||||| |||| ||||| |||||||| ||||||||| ||| |||||||| |||| |||| |||||| || |||||||||    
T  13654630 cctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaaccataacattgattc 13654531  T
Q  248 aagt 251  Q
    ||||    
T  13654530 aagt 13654527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 1188221 - 1188029
Alignment:
Q  59 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaa 158  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  1188221 caaaataatggaatcactttagaaccaaaagttgtaacttttcaccaagagttgtaactattcatgggaatctttcatatacattggaacatttggcaaa 1188122  T
Q  159 agggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||| || |||||||||||| | |||||| ||||||||||||||||| |||||||||||| ||||| ||| |||||| || |||| ||||||||    
T  1188121 aggatgattaatgaaccttagcattgatacaagtgtatatgatcataacctttggcaaatgggtgtttaatgaaccataacattaattcaagt 1188029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 59 - 265
Target Start/End: Complemental strand, 10186099 - 10185893
Alignment:
Q  59 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaa 158  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||| ||| ||| |||||    
T  10186099 caaaataatggaatcactttagaatcaaaagttgtaactcttcaccaagaattgtaactctttatgggaatctttcatatacattgaaacctttagcaaa 10186000  T
Q  159 agggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaag 258  Q
     |||||||||||||||||| |  |||||||||||||||||| | || ||||||||||||  |||||||| |||||| || ||||||||||||| | || |    
T  10185999 tgggtgcttaatgaaccttagcgttgattcaagtgtatatggttataacctttggcaaaaaggtgcttaatgaaccatatcattgattcaagtatatatg 10185900  T
Q  259 atcataa 265  Q
    |||||||    
T  10185899 atcataa 10185893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 35653036 - 35653237
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    |||||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||| ||||| || ||||| ||||||     
T  35653036 ttggtgatttccaaaataatggaatcactttggaaccaaaagttgtaactcttcaccaagagttgtaacacttcatgggaatcattcatatatattggag 35653135  T
Q  148 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattc 247  Q
    | ||||| ||| |||||||||| |||| || | || ||||||||||||||||||||| ||||||| |||||| ||||||| |||||| || |||||||||    
T  35653136 cctttggaaaaggggtgcttaacgaactttaggatcgattcaagtgtatatgatcataacctttgacaaaggagtgcttaatgaaccatatcattgattc 35653235  T
Q  248 aa 249  Q
    ||    
T  35653236 aa 35653237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 152 - 318
Target Start/End: Original strand, 21431509 - 21431675
Alignment:
Q  152 tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||  |||| ||||||||  |||| |||||||||||||||||| || || |||||||||||| ||||||||  ||||||||| |||||||||||||    
T  21431509 tggcaaataggtgtttaatgaatttttgcattgattcaagtgtatataattataacctttggcaaatgggtgcttgatgaaccttaacattgattcaagt 21431608  T
Q  252 gtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaagggg 318  Q
    || || |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21431609 gtgtatgatcataacctttggcaaaagggtgcttaatgaaccataacattgatttaagtcaaagggg 21431675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 1188389 - 1188218
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| ||||||||| ||||| |||||||| |||||||||||||||||||| ||||  ||||||||  |||  |||||    
T  1188389 tgttggtgatttccaaaataatggaatcactttagaaccaaaaattgtaacttttcaccaagagttgtaactcgtcataggaatctttcgtatgaattgg 1188290  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaa 217  Q
    |||||||||||||||| ||||||||||| |||   |||||| ||||||||||| ||||| ||||||||||||    
T  1188289 aacatttggcaaaaggatgcttaatgaatcttaacattgatacaagtgtatattatcataacctttggcaaa 1188218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 46 - 320
Target Start/End: Complemental strand, 35626591 - 35626328
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    ||||||||||||  ||||||||||||| |||||||| |||||| ||||||||||  ||||||||||          |||| ||||||| ||||||||| |    
T  35626591 tgttggtgatttctaaaataatggaatcactttaga-tcaaaaattgtaactctaaaccaagagttt---------atgaaaatctttcatatacattag 35626502  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||  |||||||||  ||| |||||||||| | ||  |||||||||||||||||||| || ||||||| |||| || |  ||| |||||||||||||||||    
T  35626501 aatctttggcaaataggtacttaatgaacttctgctttgattcaagtgtatatgattataacctttgacaaaagg-tatttaatgaaccttagcattgat 35626403  T
Q  246 tcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggta 320  Q
    ||||| || ||  |||||||  ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  35626402 tcaagagtgtataatcataacttttggcaaaagggtgttaaatgaaccataacattgatgcaagtcaaaggggta 35626328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 19311135 - 19311005
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||| || |||||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  19311135 acctttggcaaaggggtgcataatgaaccttagcattgattcaagtgtatatgatcataacctttggtaaaagggtgcttaatgaactataacattgatt 19311036  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||||  ||||| |||||||||    
T  19311035 caagtcaaaggggtgctttctctcatgtgaa 19311005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 13654631 - 13654501
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    ||||||||||||  |||||||| ||||| || ||||||| |||||||| || |||||||| | |||||||||||||  ||||||||||||||||||||||    
T  13654631 acctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaaccataacattgatt 13654532  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||||||| |||||| |||||||||    
T  13654531 caagtcaaaggggtgttttctctcatgtgaa 13654501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 1188130 - 1188005
Alignment:
Q  209 tttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaa 308  Q
    ||||||||| || || ||| ||||||||||||||||| ||||||| || |||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  1188130 tttggcaaaaggatgattaatgaaccttagcattgatacaagtgtatatgatcataacctttggcaaatgggtgtttaatgaaccataacattaattcaa 1188031  T
Q  309 gtcaaaggggtattttctatcatgtg 334  Q
    ||||||||||| ||| || |||||||    
T  1188030 gtcaaaggggtgtttactctcatgtg 1188005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 336
Target Start/End: Complemental strand, 43359169 - 43358935
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt-tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatga 200  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||| |     |  | |   ||||||||| |   |||||||||||||||||||     
T  43359169 accaagagttgtaactcttcatgagaatcattcatatacattggaacattattatttattgattgataatgaaccatgatattgattcaagtgtatatgg 43359070  T
Q  201 tcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacat 300  Q
    | || || ||||||||| ||||||| | |||||| || ||||||||||||||| || |||||||| |||||||||| ||||| |||||||| |||| |||    
T  43359069 ttataacatttggcaaaagggtgctaa-tgaaccataacattgattcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaatcatagcat 43358971  T
Q  301 tgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||||||| | ||  ||||| |||||||||    
T  43358970 tgattcaagtcaaatgagtgctttctctcatgtgaa 43358935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 17414304 - 17414408
Alignment:
Q  47 gttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgga 146  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||| || ||||||||| ||    
T  17414304 gttggtgatttccaaaataatggaatcactttagaaccaaaacttgtaactcttcaccaaaagttgtaactcttcattagaatcattcatatacattaga 17414403  T
Q  147 acatt 151  Q
    |||||    
T  17414404 acatt 17414408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 16051552 - 16051403
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 201  Q
    ||||| |||| |||||||| ||| ||||| || |||||||||  ||||||||| ||| || | ||||||||||| | | |||||||||||||||||||||    
T  16051552 accaaaagttataactctttatgggaatcattcatatacattataacatttggtaaatggatacttaatgaaccatagcattgattcaagtgtatatgat 16051453  T
Q  202 catgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||| || ||||||||| | ||||||| |||||| || |||||||||||||    
T  16051452 cataacatttggcaaatgagtgcttaatgaaccatatcattgattcaagt 16051403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 16051489 - 16051375
Alignment:
Q  224 cttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattt 323  Q
    |||| |||||| |||||||||||||||||| || ||||||||  ||||||||| | ||| ||||||||||||| ||||||||||||||||| |||| |||    
T  16051489 cttaatgaaccatagcattgattcaagtgtatatgatcataacatttggcaaatgagtgcttaatgaaccatatcattgattcaagtcaaaagggtgttt 16051390  T
Q  324 tctatcatgtgaatg 338  Q
    ||  |||||||||||    
T  16051389 tcactcatgtgaatg 16051375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 10186011 - 10185907
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||| ||||| ||||||||| ||||||||||| ||||||||||||| || | | |||| ||||||||||| |||| ||||||||||||| ||||||||    
T  10186011 acctttagcaaatgggtgcttaatgaaccttagcgttgattcaagtgtatatggttataacctttggcaaaaaggtgcttaatgaaccatatcattgatt 10185912  T
Q  306 caagt 310  Q
    |||||    
T  10185911 caagt 10185907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 21431566 - 21431667
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaa 249  Q
    ||||||||| |||||||| |||||||||   |||||||||||||| ||||||||| |||||||||||| ||||||||| |||||| || |||||||| ||    
T  21431566 tttggcaaatgggtgcttgatgaaccttaacattgattcaagtgtgtatgatcataacctttggcaaaagggtgcttaatgaaccataacattgatttaa 21431665  T
Q  250 gt 251  Q
    ||    
T  21431666 gt 21431667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 207 - 336
Target Start/End: Original strand, 35653136 - 35653265
Alignment:
Q  207 cctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattc 306  Q
    ||||||| |||||||||||||  |||| |||| || ||||||||||| || |||||||| ||||| |||| | ||| ||||||||||||| |||||||||    
T  35653136 cctttggaaaaggggtgcttaacgaactttaggatcgattcaagtgtatatgatcataacctttgacaaaggagtgcttaatgaaccatatcattgattc 35653235  T
Q  307 aagtcaaaggggtattttctatcatgtgaa 336  Q
    || ||||| | || |||||| |||||||||    
T  35653236 aattcaaatgagtgttttctctcatgtgaa 35653265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 44523889 - 44524017
Alignment:
Q  63 ataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaaggg 162  Q
    |||||||||| ||||| ||| |||||||||||| ||||| | |||||||||||||||||||| ||||| || |||||||||  ||| |||| |||| |||    
T  44523889 ataatggaatcacttt-gaaccaaaagttgtaaatcttcgctaagagttgtaactcttcatgggaatcattcatatacatttaaacctttgtcaaagggg 44523987  T
Q  163 tgcttaatgaacctttgaattgattcaagt 192  Q
    ||||||||||||| |   ||||||||||||    
T  44523988 tgcttaatgaaccataacattgattcaagt 44524017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 21430777 - 21430863
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttt 133  Q
    |||||||||||||||||||||| |||| | |||||| |||||||||||||||||||| ||| |||| ||| |||| ||||||||||||    
T  21430777 tgttggtgattttcaaaataatagaatcattttaga-tcaaaagttgtaactcttcatcaaaagttataattctttatgagaatcttt 21430863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 3696110 - 3696208
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 143  Q
    |||||||| ||||  ||||||||||||| ||||| ||||||||||||||||||||| | ||| ||||| |||| |||||| ||||| || |||||||||    
T  3696110 atgttggtaatttctaaaataatggaatcactttggaatcaaaagttgtaactctttatcaaaagttgcaacttttcatgggaatcattcatatacatt 3696208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 28574700 - 28574644
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  28574700 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 28574644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 3468472 - 3468415
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||||| ||||||    
T  3468472 atgttggtgatttccaaaataatggaatcattttagaatcaaaagttgtaattcttca 3468415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 43359206 - 43359149
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||    
T  43359206 atgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttca 43359149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 28598712 - 28598656
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  28598712 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttca 28598656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 44523974 - 44524032
Alignment:
Q  267 ctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttc 325  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  44523974 ctttgtcaaaggggtgcttaatgaaccataacattgattcaagtcaaatgggtgttttc 44524032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 3468357 - 3468260
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| |||||||||||||| ||||  ||  ||||| |||||||||    
T  3468357 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagatgtgctttctctcatgtgaa 3468260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 28574586 - 28574489
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  ||| |||||| |||||||||    
T  28574586 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaa 28574489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 28598598 - 28598501
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  ||| |||||| |||||||||    
T  28598598 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaa 28598501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 28574585 - 28574515
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  28574585 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 28574515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 28598597 - 28598527
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  28598597 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 28598527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 3701370 - 3701451
Alignment:
Q  229 tgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    |||||| |||||||||||||||||| |  ||||| || |||||| |||  | || |||||||||||||| ||||||||||||    
T  3701370 tgaaccatagcattgattcaagtgtatctgatcacaacctttggtaaattgatgcttaatgaaccataatattgattcaagt 3701451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 10185949 - 10185885
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggc 214  Q
    |||||||||| ||||||||||||||| |   |||||||||||| ||||||||||| ||| |||||    
T  10185949 tttggcaaaaaggtgcttaatgaaccatatcattgattcaagtatatatgatcataacccttggc 10185885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 3468356 - 3468286
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  3468356 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 3468286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 28574664 - 28574615
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  28574664 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 28574615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 28598676 - 28598627
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  28598676 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 28598627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 44523972 - 44524017
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||| |||||||||||||| |||||| || |||||||||||||    
T  44523972 acctttgtcaaaggggtgcttaatgaaccataacattgattcaagt 44524017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 1188285 - 1188217
Alignment:
Q  209 tttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaa 277  Q
    ||||||||| || |||||| |||| |||| ||||||| ||||||| ||  ||||||| |||||||||||    
T  1188285 tttggcaaaaggatgcttaatgaatcttaacattgatacaagtgtatattatcataacctttggcaaaa 1188217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 3701367 - 3701451
Alignment:
Q  167 taatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||||| | | |||||||||||||||| ||||||  |||||||| |||  | |||||| |||||| ||  ||||||||||||    
T  3701367 taatgaaccatagcattgattcaagtgtatctgatcacaacctttggtaaattgatgcttaatgaaccataatattgattcaagt 3701451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 173766 - 173561
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  173766 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 173667  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||| || |||| |||||| ||| ||| |||||||||||||||||    
T  173666 aacctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaaccttagcattgat 173567  T
Q  246 tcaagt 251  Q
    ||||||    
T  173566 tcaagt 173561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 173665 - 173535
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||| || ||||||||  |||| |||| | |||||||||||||| || ||||||||    
T  173665 acctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaaccttagcattgatt 173566  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| |||| ||||||||||||||||    
T  173565 caagtcaaatgggtgttttctatcatgtgaa 173535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 46 - 251
Target Start/End: Original strand, 14643526 - 14643731
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||| || |||||||||||    
T  14643526 tgttggtgatttacaaaataattgaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattgg 14643625  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||| || |||| |||||| ||| ||| |||||||||||||||||    
T  14643626 aacctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaaccttagcattgat 14643725  T
Q  246 tcaagt 251  Q
    ||||||    
T  14643726 tcaagt 14643731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 47071814 - 47071609
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  47071814 tgttggtgatttccaaaataatggaatcactttacaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgaaaatcattcatatacattgg 47071715  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||| |||||||||||||||| |   |||||||||||||||||||||||| |||||||||||| || |||||| |||||| | ||||||||    
T  47071714 aacctttggcaaatgggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaaccattgcattgat 47071615  T
Q  246 tcaagt 251  Q
    ||||||    
T  47071614 tcaagt 47071609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 22119130 - 22118925
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |||||||| ||| |||| || || ||||||||    
T  22119130 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtaactcttcatcaagagttgcaactcttcctgaaaatcattcatttacattgg 22119031  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||   ||||| |||||||||||||||| |||||| ||  ||| ||    
T  22119030 aacctttggcaaatgggtgcttaatgaaccttagcattgattcaagtgtatatgatcgcaaccttcggcaaaggggtgcttaatgaaccatattattcat 22118931  T
Q  246 tcaagt 251  Q
    ||||||    
T  22118930 tcaagt 22118925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 30019636 - 30019833
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 143  Q
    ||||||||||||||  ||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  30019636 tatgttggtgatttctaaaataatggaatcactttagaatcaa--gttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacatt 30019733  T
Q  144 ggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattg 243  Q
    ||||| |||       |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||  |||||||| |||||| || || ||    
T  30019734 ggaaccttt-------gggtgcttaatgaacctttgcattgattcaagtgtgtatgatcataacctttggcaaaaaggtgcttaatgaaccataaca-tg 30019825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 105 - 333
Target Start/End: Original strand, 25618089 - 25618316
Alignment:
Q  105 aagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcat 204  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||| |||| ||||||||| |||||||||| |||| ||||||||||||||||||| | ||    
T  25618089 aagagttgtaactgttcatgaga-tctttcatatacattgtaacctttgacaaaagggttcttaatgaacttttgcattgattcaagtgtatatggttat 25618187  T
Q  205 gacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgat 304  Q
     || ||||||||| ||||||||| |||||| || ||||||||||||||| || |||||||| |||| ||||  || || |||||||| ||||||||||||    
T  25618188 aacatttggcaaaagggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttcgcaactggatgcttaatgaatcataacattgat 25618287  T
Q  305 tcaagtcaaaggggtattttctatcatgt 333  Q
    |||||||| || ||| |||||| ||||||    
T  25618288 tcaagtcacagaggtgttttctctcatgt 25618316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 117 - 336
Target Start/End: Original strand, 34279305 - 34279525
Alignment:
Q  117 tcttcatgagaatcttttatatacattggaa-catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggca 215  Q
    |||||||| ||||| || ||||||||| ||| | |||| |||| |||||||||||||||||| | ||||||||||||||||||||| || ||||||||||    
T  34279305 tcttcatgggaatcattcatatacattagaatcttttgacaaatgggtgcttaatgaaccttagcattgattcaagtgtatatgattataacctttggca 34279404  T
Q  216 aaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaag 315  Q
    || | ||||||| | ||||||| |||||||| |||||| || |||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||     
T  34279405 aatgagtgcttaataaaccttaacattgatttaagtgtatatgatcataacctttggtaaaagggtgttcaattaaccataacattgattcaagtcaaat 34279504  T
Q  316 gggtattttctatcatgtgaa 336  Q
    | || |||||| |||||||||    
T  34279505 gagtgttttctctcatgtgaa 34279525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 46 - 336
Target Start/End: Original strand, 3409329 - 3409620
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||| |||||| ||||||| ||||||||||||||||||| | || |||||||||||    
T  3409329 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgttactcttgaccaagatttgtaactcttcatgagaaccattcatatacattgg 3409428  T
Q  146 aacatt-tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattga 244  Q
    |||||| |     |  | |   ||||||||| |   |||||||||| ||| |||  | || |||||||||||| |||| |||| |||||| || ||||||    
T  3409429 aacattattatttattgatagataatgaaccatgacattgattcaaatgtgtatagttataacctttggcaaaagggtacttaatgaaccataacattga 3409528  T
Q  245 ttcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| || |||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||||||| || |||||| |||||||||    
T  3409529 ttcaagtgtatatgatcataacctttggcaaaggggtgcttaatgaatcatagcattgattcaagtcaaaggagtgttttctctcatgtgaa 3409620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 54859022 - 54859163
Alignment:
Q  110 ttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacct 209  Q
    ||||||||||||||  ||||| || |||||||||||||| |||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||    
T  54859022 ttgtaactcttcattggaatcattcatatacattggaacctttggcaaaagggtgcttaatgaaacataacattgattcaagtgtatatgatcataacct 54859121  T
Q  210 ttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||| || |||||| |||||| || |||||||||||||    
T  54859122 ttggcaaatggatgcttaatgaaccataacattgattcaagt 54859163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 14643627 - 14643757
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||| || ||||||||  |||| |||| | |||||||||||||| || ||||||||    
T  14643627 acctttggcaaaagggtgcttaatgaaccttaacattgattcaagtgtatatgatcataacatttgacaaaggagtgtttaatgaaccttagcattgatt 14643726  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| |||| ||||||||||||||||    
T  14643727 caagtcaaatgggtgttttctatcatgtgaa 14643757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 50 - 319
Target Start/End: Complemental strand, 18716958 - 18716689
Alignment:
Q  50 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaaca 149  Q
    |||||||| |||||||||||||| | ||||||| ||||| | ||||||||||||||||||||||||||||||||| ||| | || ||||||||||| |||    
T  18716958 ggtgatttccaaaataatggaatcagtttagaaccaaaact-gtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtaca 18716860  T
Q  150 tttggcaaaaggg-tgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattca 248  Q
    ||       || | |   ||||||||| |   ||||||||||||||||||| | || ||||||||| ||   ||||||| |||||| || ||||||||||    
T  18716859 ttattatttagtgatagataatgaaccatgacattgattcaagtgtatatggttataacctttggccaaatagtgcttaatgaaccataacattgattca 18716760  T
Q  249 agtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggt 319  Q
    ||||| || ||||||||  ||||| ||||| | | ||||||||||||| ||||||||||||||||| ||||    
T  18716759 agtgtatatgatcataacttttggtaaaagagagcttaatgaaccatatcattgattcaagtcaaatgggt 18716689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 54859059 - 54859190
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||| ||||||||| |||| | || ||||||||||||||| || |||||||| |||||||||| || || ||||||||||||||||||||||    
T  54859059 acctttggcaaaagggtgcttaatgaaacataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaaccataacattgatt 54859158  T
Q  306 caagtcaaa-ggggtattttctatcatgtgaa 336  Q
    ||||||||| ||||| |||||| |||||||||    
T  54859159 caagtcaaagggggtgttttctctcatgtgaa 54859190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 336
Target Start/End: Original strand, 32429152 - 32429305
Alignment:
Q  183 tgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtg 282  Q
    ||||||||||||||||| | || || ||||||||| ||||||||| |||| | || ||||||||||||||| || |||||||| ||||| |||| |||||    
T  32429152 tgattcaagtgtatatggttataacatttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaaggggtg 32429251  T
Q  283 tttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
     |||||||| |||  |||||||||||||||||||||| |||||| |||| ||||    
T  32429252 cttaatgaatcatggcattgattcaagtcaaaggggtgttttctctcatttgaa 32429305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 44 - 251
Target Start/End: Original strand, 34601823 - 34602024
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacatt 143  Q
    ||||||||||||||  ||||||||||||| | |||||||  ||||||||||||| ||||| |  ||||||||||||||||||||||| || |||||||||    
T  34601823 tatgttggtgatttctaaaataatggaatcattttagaactaaaagttgtaacttttcacgagaagttgtaactcttcatgagaatcattcatatacatt 34601922  T
Q  144 ggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattg 243  Q
     |||  ||||||||| |||||||||||||||| |   |||||      | ||||||||||| ||||||| |||| || || ||| |||||  ||||||||    
T  34601923 tgaatctttggcaaaggggtgcttaatgaaccataacattga------tatatatgatcataacctttgacaaatggatgtttaatgaactatagcattg 34602016  T
Q  244 attcaagt 251  Q
    ||||||||    
T  34602017 attcaagt 34602024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 22119029 - 22118897
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||  || ||| |||||| ||||| |||||||||||||  ||| |||    
T  22119029 acctttggcaaatgggtgcttaatgaaccttagcattgattcaagtgtatatgatcgcaaccttcggcaaaggggtgcttaatgaaccatattattcatt 22118930  T
Q  306 caagtcaaaggg--gtattttctatcatgtgaa 336  Q
    ||||||||||||  ||||||||| |||||||||    
T  22118929 caagtcaaaggggtgtattttctctcatgtgaa 22118897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 336
Target Start/End: Original strand, 30019743 - 30019859
Alignment:
Q  219 gggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaagggg 318  Q
    ||||||||| |||||||| |||||||||||||||| || |||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||| |||    
T  30019743 gggtgcttaatgaacctttgcattgattcaagtgtgtatgatcataacctttggcaaaaaggtgcttaatgaaccataaca-tgattcaagtcaaatggg 30019841  T
Q  319 tattttctatcatgtgaa 336  Q
    |  ||||| |||||||||    
T  30019842 tgctttctctcatgtgaa 30019859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 336
Target Start/End: Complemental strand, 18671177 - 18671022
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaaggg 280  Q
    ||||||| ||||||||||| | || ||||||||||||  |||||||| |||||| || ||||||||||||||| || ||  |||| |||||| ||||| |    
T  18671177 attgatttaagtgtatatggttataacctttggcaaaatggtgcttaatgaaccataacattgattcaagtgtatatgaagataacctttggtaaaagag 18671078  T
Q  281 tgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
     | ||||||||||||| ||||||||||||||||| ||||  ||||| |||||||||    
T  18671077 ggcttaatgaaccatagcattgattcaagtcaaatgggtgctttctctcatgtgaa 18671022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 50 - 319
Target Start/End: Complemental strand, 18737634 - 18737362
Alignment:
Q  50 ggtgattttcaaaataatggaattactttagaatcaaaagttgtaactct---tcaccaagagttgtaactcttcatgagaatcttttatatacattgga 146  Q
    |||||||| |||||||||||||| | ||||||| ||||| ||||||||||   ||||||||||||||||||||||||| ||| | || |||||||||||     
T  18737634 ggtgatttccaaaataatggaatcagtttagaaccaaaa-ttgtaactctaattcaccaagagttgtaactcttcatgggaaccattcatatacattggt 18737536  T
Q  147 acatttggcaaaaggg-tgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    |||||       || | |   ||||||||| |   ||||||||||||||||||  | || ||||||||| ||   ||||||| |||||| || |||||||    
T  18737535 acattattatttagtgatagataatgaaccatgacattgattcaagtgtatattgttataacctttggctaaattgtgcttaatgaaccataacattgat 18737436  T
Q  246 tcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggt 319  Q
    |||||||| || ||||||||  ||||| ||||| | | ||||||||||||| ||||||||||||||||| ||||    
T  18737435 tcaagtgtatatgatcataacttttggtaaaagagagcttaatgaaccatatcattgattcaagtcaaatgggt 18737362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 32429174 - 32429279
Alignment:
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    |||||||||||||||||||||||||||| | |   |||||||||||||||||||||||| ||||||| |||||||||||||| |||| | | ||||||||    
T  32429174 aacatttggcaaaagggtgcttaatgaatcataacattgattcaagtgtatatgatcataacctttgacaaaggggtgcttaatgaatcatggcattgat 32429273  T
Q  246 tcaagt 251  Q
    ||||||    
T  32429274 tcaagt 32429279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 314
Target Start/End: Complemental strand, 47071713 - 47071605
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    |||||||||||| ||||||||| |||||| || ||||||||||||||| || |||||||| |||||||||| || || ||||||||||||  ||||||||    
T  47071713 acctttggcaaatgggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggatgcttaatgaaccattgcattgatt 47071614  T
Q  306 caagtcaaa 314  Q
    |||||||||    
T  47071613 caagtcaaa 47071605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 18671149 - 18671048
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaa 249  Q
    |||||||||| ||||||||||||||| |   ||||||||||||||||||||  || |||||||| ||| | | ||||| |||||| ||||||||||||||    
T  18671149 tttggcaaaatggtgcttaatgaaccataacattgattcaagtgtatatgaagataacctttggtaaaagagggcttaatgaaccatagcattgattcaa 18671050  T
Q  250 gt 251  Q
    ||    
T  18671049 gt 18671048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 35091318 - 35091262
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  35091318 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 35091262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 35096433 - 35096375
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  35096433 tatgttggtgatttccaaaataatggaatcactttagaacaaaaagttgtaactcttca 35096375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 3424114 - 3424170
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  3424114 tgtttgtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 3424170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 3424228 - 3424300
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtc 311  Q
    ||||||||||| ||| || | | |||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  3424228 cattgattcaaatgtgtatggttataacctttggcaaaagggtgcttaatgaaccataacattgatttaagtc 3424300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 32429034 - 32429090
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||    
T  32429034 tgttggtgatttccaaaataatggaatcactttagaaccaagagttgtaactcttca 32429090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 18671178 - 18671107
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    |||||||| |||||| || | | |||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  18671178 cattgatttaagtgtatatggttataacctttggcaaaatggtgcttaatgaaccataacattgattcaagt 18671107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 338
Target Start/End: Original strand, 34601928 - 34602052
Alignment:
Q  208 ctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattca 307  Q
    |||||||||||||||||||| |||||| || |||||||  |      || |||||||| ||||| |||| || |||||||||||| ||| ||||||||||    
T  34601928 ctttggcaaaggggtgcttaatgaaccataacattgatata------tatgatcataacctttgacaaatggatgtttaatgaactatagcattgattca 34602021  T
Q  308 agtcaaaggggtattttctatcatgtgaatg 338  Q
    ||||||| | || |||| | |||||||||||    
T  34602022 agtcaaatgagtgttttttctcatgtgaatg 34602052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 3424257 - 3424330
Alignment:
Q  150 tttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtg 223  Q
    |||||||||||||||||||||||||| |   ||||||| ||||  |||||||||| ||||||| ||||||||||    
T  3424257 tttggcaaaagggtgcttaatgaaccataacattgatttaagtcgatatgatcataacctttgacaaaggggtg 3424330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 35091204 - 35091107
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  35091204 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 35091107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 35096317 - 35096220
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  35096317 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 35096220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 283
Target Start/End: Original strand, 3424229 - 3424331
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaaggg 280  Q
    |||||||||| ||| |||| | || |||||||||||| ||||||||| |||||| || |||||||| ||||   || |||||||| ||||| |||| |||    
T  3424229 attgattcaaatgtgtatggttataacctttggcaaaagggtgcttaatgaaccataacattgatttaagtcgatatgatcataacctttgacaaagggg 3424328  T
Q  281 tgt 283  Q
    |||    
T  3424329 tgt 3424331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 35091203 - 35091133
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  35091203 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 35091133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 35096316 - 35096246
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  35096316 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 35096246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 32429070 - 32429119
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||    
T  32429070 accaagagttgtaactcttcatggaaatcattcatatacattggaacatt 32429119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 91
Target Start/End: Original strand, 34279254 - 34279299
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagtt 91  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||    
T  34279254 tgttggtgatttccaaaataatggaatcactttagaaccaaaagtt 34279299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 34601925 - 34601965
Alignment:
Q  264 aatctttggcaaaagggtgtttaatgaaccataacattgat 304  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  34601925 aatctttggcaaaggggtgcttaatgaaccataacattgat 34601965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 34128159 - 34128218
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagg 161  Q
    ||||| ||||||||||||   ||||||||||| ||||| |||||||| ||||||||||||    
T  34128159 accaaaagttgtaactctctgtgagaatctttcatatatattggaacctttggcaaaagg 34128218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 35091282 - 35091233
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  35091282 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 35091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 34128220 - 34128272
Alignment:
Q  284 ttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| ||||||||||||||||||||| | || |||||| | |||||||    
T  34128220 ttaatgaactataacattgattcaagtcaaatgagtgttttctctaatgtgaa 34128272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 48 - 251
Target Start/End: Complemental strand, 144491 - 144288
Alignment:
Q  48 ttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaa 147  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  144491 ttggtaatttccaaaataatggaatcactttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgagagtctttcatatacattggaa 144392  T
Q  148 catttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattc 247  Q
    | |||||||||  |||||||||||||| |||| ||||| |||||||| ||||||||| ||| |||||||| |||| |||| |||||| || |||||||||    
T  144391 cctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaaccataacattgattc 144292  T
Q  248 aagt 251  Q
    ||||    
T  144291 aagt 144288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 144392 - 144262
Alignment:
Q  206 acctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgatt 305  Q
    ||||||||||||  |||||||| ||||| || ||||||| |||||||| || |||||||| | |||||||||||||  ||||||||||||||||||||||    
T  144392 acctttggcaaataggtgcttaatgaacttttgcattgactcaagtgtgtatgatcataacccttggcaaaagggtacttaatgaaccataacattgatt 144293  T
Q  306 caagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||||||| |||||| |||||||||    
T  144292 caagtcaaaggggtgttttctctcatgtgaa 144262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 6e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 108 - 336
Target Start/End: Complemental strand, 716674 - 716446
Alignment:
Q  108 agttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgac 207  Q
    ||||||||||||| ||| |||||||| |||||||||||||| || || |||  |||| ||||| |||||||| ||||||||||||||||||||| || ||    
T  716674 agttgtaactctttatgtgaatctttcatatacattggaaccttaggtaaataggtgtttaataaacctttgcattgattcaagtgtatatgattataac 716575  T
Q  208 ctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattca 307  Q
    |||||| ||||||||||||| |||| ||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| |||||||||||||    
T  716574 ctttggtaaaggggtgcttaatgaagcttagcattgattcaagagtgtatgatcataacctttggcaaaaaggtgtttaatggaccgtaacattgattca 716475  T
Q  308 agtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||| | |||||| |||| ||||    
T  716474 agtcaaagggatgttttctctcatatgaa 716446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 46 - 251
Target Start/End: Complemental strand, 42780596 - 42780391
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  42780596 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgttactcttgaccaaaagttgtaactcttcatgagaatctttcatatacattgg 42780497  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgat 245  Q
    ||| ||| |||||  ||||||||||||||| |   |||||||||||||||||||||||| |||||||||||| ||  ||||| |||||| || |||||||    
T  42780496 aacttttagcaaataggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggtggcttaatgaaccataacattgat 42780397  T
Q  246 tcaagt 251  Q
    ||||||    
T  42780396 tcaagt 42780391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 220 - 336
Target Start/End: Complemental strand, 42780481 - 42780365
Alignment:
Q  220 ggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggt 319  Q
    |||||||| |||||| || ||||||||||||||| || |||||||| |||||||||| ||  | ||||||||||||||||||||||||||||||||||||    
T  42780481 ggtgcttaatgaaccataacattgattcaagtgtatatgatcataacctttggcaaatggtggcttaatgaaccataacattgattcaagtcaaaggggt 42780382  T
Q  320 attttctatcatgtgaa 336  Q
     |||||| |||||||||    
T  42780381 gttttctctcatgtgaa 42780365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 336
Target Start/End: Original strand, 20892197 - 20892361
Alignment:
Q  171 gaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatcttt 270  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||  | ||| ||| |||||| || ||||||||||||||| || ||||||||  |||    
T  20892197 gaacatttgtattgattcaagtgtatatgatcatgacatttggcaagtgagtgattaatgaaccataacattgattcaagtgtatatgatcataacattt 20892296  T
Q  271 ggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    | ||||| |||| ||||||||||| ||||||||||||| ||||| | || |||||| || ||||||    
T  20892297 gccaaaaaggtgcttaatgaacca-aacattgattcaaatcaaatgagtgttttctctcgtgtgaa 20892361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 20892111 - 20892205
Alignment:
Q  59 caaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaacatttg 153  Q
    |||||||||||||| |||||| || ||||||||||| || |||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  20892111 caaaataatggaatcactttaaaaccaaaagttgtatcttttcaccaagagttgtaactcttcatgagaaccattcatatacattggaacatttg 20892205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 30283365 - 30283462
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| |||||| |||||||||    
T  30283365 cattgattcaagtatatatggttataatctttggcaaaagggtgcttaatgaaccataatattgattcaagttaaaggggtgttttctttcatgtgaa 30283462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 14917183 - 14917239
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  14917183 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 14917239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 17720000 - 17720056
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  17720000 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 17720056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 45120790 - 45120734
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  45120790 tgttggtgatttccaaaataatggaatcactttagaattaaaagttgtaactcttca 45120734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 30283249 - 30283307
Alignment:
Q  44 tatgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  30283249 tatgttggtgatttccaaaataatggaatcattttagaaccaaaagttgtaactcttca 30283307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 45120676 - 45120579
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| |||||||||||||| |||| |||  ||||| |||||||||    
T  45120676 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaa 45120579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 17720327 - 17720383
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||    
T  17720327 tgttggtgatttccaaaataatagaatcactttagaaccaaaagttgtaactcttca 17720383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 39179002 - 39178946
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||    
T  39179002 tgttggtgatttccaaaataatggaatcactttagaactaaaagttgtaactcttca 39178946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 16286084 - 16286013
Alignment:
Q  265 atctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||| |||| |||||||||||||| ||||| |||||| |||| ||| |||| |||||| |||||||||    
T  16286084 atctttggtaaaatggtgtttaatgaactataacgttgattgaagttaaatgggtgttttctctcatgtgaa 16286013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14917298 - 14917368
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  14917298 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 14917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 17720464 - 17720538
Alignment:
Q  262 ataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  17720464 ataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 17720538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 14917297 - 14917394
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  | | |||||| |||||||||    
T  14917297 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaatagctgttttctctcatgtgaa 14917394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23481969 - 23481924
Alignment:
Q  1 actttattgaattagaatgcttaaaataacataaactatgacttat 46  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||    
T  23481969 actttattgaattaaaatacttaaaataacatgaactatgacttat 23481924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 234
Target Start/End: Original strand, 20892232 - 20892319
Alignment:
Q  147 acatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 234  Q
    |||||||||||  | ||| |||||||||| |   |||||||||||||||||||||||| || |||| ||||  |||||||| ||||||    
T  20892232 acatttggcaagtgagtgattaatgaaccataacattgattcaagtgtatatgatcataacatttgccaaaaaggtgcttaatgaacc 20892319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 17720442 - 17720512
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||| |||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  17720442 attgattgaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 17720512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 30283366 - 30283436
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || | |||||||||| ||||||||| |||||| ||  ||||||||||||    
T  30283366 attgattcaagtatatatggttataatctttggcaaaagggtgcttaatgaaccataatattgattcaagt 30283436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 45120675 - 45120605
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  45120675 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 45120605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 14917219 - 14917268
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14917219 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14917268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 17720363 - 17720412
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  17720363 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 17720412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 49 - 251
Target Start/End: Original strand, 18608435 - 18608636
Alignment:
Q  49 tggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaac 148  Q
    ||||||||| |||||||||||||| |||||||||  ||||||||| | |||| ||||||||||||||||||||||| ||||| || ||||| ||||| |     
T  18608435 tggtgatttccaaaataatggaatcactttagaactaaaagttgtgattcttaaccaagagttgtaactcttcatgggaatcattcatata-attgggat 18608533  T
Q  149 atttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattca 248  Q
     ||||||||| |||||||| ||||||| | | | ||||||||||||||||| |||| |||||||||||||||||||||| |||||| || ||||||||||    
T  18608534 ctttggcaaaggggtgcttgatgaaccatagcagtgattcaagtgtatatgttcataacctttggcaaaggggtgcttaatgaaccataacattgattca 18608633  T
Q  249 agt 251  Q
    |||    
T  18608634 agt 18608636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 338
Target Start/End: Original strand, 25953012 - 25953189
Alignment:
Q  162 gtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatc 261  Q
    |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||  | ||||||  |||||||||  |||||||||||||| || ||||    
T  25953012 gtgcttaatgaacccttgcattgattcaagtgtatattatcatgagctttggcaattgagtgcttgatgaaccttaatattgattcaagtgtatatgatc 25953111  T
Q  262 ataa-tctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaatg 338  Q
    ||||   |||||||||||| || |||||||||||||| ||||||| |||||||| |||| |||||| |||||||||||    
T  25953112 ataacattttggcaaaaggatgcttaatgaaccataaaattgatttaagtcaaatgggtgttttctctcatgtgaatg 25953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 18608534 - 18608662
Alignment:
Q  208 ctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattca 307  Q
    |||||||||||||||||||  |||||| ||||| |||||||||||| || | |||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  18608534 ctttggcaaaggggtgcttgatgaaccatagcagtgattcaagtgtatatgttcataacctttggcaaaggggtgcttaatgaaccataacattgattca 18608633  T
Q  308 agtcaaaggggtattttctatcatgtgaa 336  Q
    ||| |||||||| |||||| |||||||||    
T  18608634 agttaaaggggtgttttctctcatgtgaa 18608662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 104 - 251
Target Start/End: Original strand, 43956689 - 43956836
Alignment:
Q  104 caagagttgtaactcttcatgagaatcttttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatca 203  Q
    |||||||||||||||||||||  ||||||| |||||||||||||  |||||||||  |||||||||||||| |||  |||||||||| |||||||||| |    
T  43956689 caagagttgtaactcttcatggaaatctttcatatacattggaatctttggcaaataggtgcttaatgaacatttacattgattcaaatgtatatgatta 43956788  T
Q  204 tgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    | ||||||||||||  |||||||| |||| | ||||||||||||||||    
T  43956789 taacctttggcaaaaaggtgcttaatgaatcatagcattgattcaagt 43956836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 336
Target Start/End: Original strand, 10340697 - 10340979
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattg 144  Q
    ||||||||||||| | |||||||||||| ||||||||| |||||||||| | |||| |||||||||||||||||||||||  || | || ||||||||||    
T  10340697 atgttggtgatttcccaaataatggaatcactttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcatggaaaccattcatatacattg 10340796  T
Q  145 gaacatt-tggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattg 243  Q
    ||||||| |     |  | |   ||||||||| |   |||||||||||||| |||| | || |||||||          ||||| |||| | || |||||    
T  10340797 gaacattattatttattgatagataatgaaccatgacattgattcaagtgtgtatggttataacctttg----------gcttaatgaatcataacattg 10340886  T
Q  244 attcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||| || |||||||| ||||| |||||||||| |||||||| |||| |||||||||||||||||| |||  ||| | |||||||||    
T  10340887 attcaagtgtatatgatcataacctttgacaaaagggtgcttaatgaatcatagcattgattcaagtcaaagaggtgctttttctcatgtgaa 10340979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 46 - 201
Target Start/End: Complemental strand, 1782237 - 1782083
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||||| |||||  ||||||||||||||| |||||||  ||||||| ||||||||||| |||||||||||||||| | | ||||| || ||||  |||||    
T  1782237 tgttggagatttctaaaataatggaattattttagaacaaaaagttataactcttcac-aagagttgtaactctttacgtgaatcattcatatgtattgg 1782139  T
Q  146 aacatttggcaaaagggtgcttaatgaacctttgaattgattcaagtgtatatgat 201  Q
    ||| |||||||||   ||| |||||||||| |   |||||||||||||||||||||    
T  1782138 aacctttggcaaatcagtgattaatgaaccataacattgattcaagtgtatatgat 1782083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 14314712 - 14314766
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14314712 tgttggtgattttcaaaataatggaattactttagaaccaaaagttgtaactctt 14314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 43956734 - 43956862
Alignment:
Q  208 ctttggcaaaggggtgcttagtgaaccttagcattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattca 307  Q
    ||||||||||  |||||||| ||||| ||  ||||||||||| ||| || ||| |||| ||||||||||| |||| |||||||| |||| ||||||||||    
T  43956734 ctttggcaaataggtgcttaatgaacatttacattgattcaaatgtatatgattataacctttggcaaaaaggtgcttaatgaatcatagcattgattca 43956833  T
Q  308 agtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||| | ||  ||||| |||||||||    
T  43956834 agtcaaatgagtgctttctctcatgtgaa 43956862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 43956650 - 43956707
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  43956650 atgttggtgatttttaaaataatggaatcactttagaatcaagagttgtaactcttca 43956707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 14318416 - 14318472
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  14318416 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 14318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 26981676 - 26981732
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26981676 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26981732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 26986790 - 26986846
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26986790 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26986846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 34108634 - 34108578
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  34108634 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 34108578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15207192 - 15207147
Alignment:
Q  1 actttattgaattagaatgcttaaaataacataaactatgacttat 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  15207192 actttattgaattagactgcttaaaataacataaactatgacttat 15207147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 34108520 - 34108423
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| |||||||||||||| |||| |||  ||||| |||||||||    
T  34108520 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaagaggtgctttctctcatgtgaa 34108423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 18493978 - 18494034
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  18493978 tgttggtgatttccaaaataatggaatcaatttagaaccaaaagttgtaactcttca 18494034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 14314826 - 14314923
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  ||| |||||| |||||||||    
T  14314826 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaa 14314923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 14318530 - 14318627
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||  ||| |||||| |||||||||    
T  14318530 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaataggtgttttctctcatgtgaa 14318627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 26981790 - 26981887
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26981790 cattgattcaagtatatacggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26981887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 26986904 - 26987001
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26986904 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26987001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 1782062 - 1782010
Alignment:
Q  284 ttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  1782062 ttaatgaaccataacattgattcaagtcaaaatagtattttctctcatgtgaa 1782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 18494092 - 18494163
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagt 310  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| ||||||||||||||    
T  18494092 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 18494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14314827 - 14314897
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  14314827 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 14314897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 14318531 - 14318601
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  14318531 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 14318601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 26986905 - 26986975
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26986905 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26986975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15201435 - 15201390
Alignment:
Q  1 actttattgaattagaatgcttaaaataacataaactatgacttat 46  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||    
T  15201435 actttatcgaattagaatgcttaaaatgatataaactatgacttat 15201390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 25952305 - 25952368
Alignment:
Q  85 aaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattggaac 148  Q
    |||||||||||||||||||||| | || ||| ||||||| | ||||||| ||||| ||||||||    
T  25952305 aaaagttgtaactcttcaccaacaattataattcttcattacaatctttcatatatattggaac 25952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 18494093 - 18494163
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  18494093 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 18494163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 26981791 - 26981861
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||| | | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26981791 attgattcaagtatatacggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26981861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 34108519 - 34108449
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  34108519 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 34108449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 14318452 - 14318501
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14318452 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14318501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 18494014 - 18494063
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  18494014 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 18494063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 26981712 - 26981761
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26981712 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26981761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 26986826 - 26986875
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26986826 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26986875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 34108598 - 34108549
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  34108598 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 34108549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 37459703 - 37459832
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcatgagaatcttttatatacattgg 145  Q
    |||| |||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||| ||  | ||||||||||| ||||| || ||||||||||     
T  37459703 tgttagtgatttttaaaataatggaatcactttaaaatcaaaagttttaactcttcaccaaaagcaggaactcttcatgggaatcattcatatacattgt 37459802  T
Q  146 aacatttggcaaaagggtgcttaatgaacc 175  Q
    ||| ||||||||| | ||| ||||||||||    
T  37459803 aacctttggcaaatgagtgtttaatgaacc 37459832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 2248853 - 2248930
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttcaccaagagttgtaactcttcat 123  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  2248853 tgttggtgatttctaaaataatggaatcactttagaaccaaaagtagtaactcttcagcaagagttgtaactcttcat 2248930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 5440217 - 5440312
Alignment:
Q  241 ttgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||| |||||| || | ||||||  ||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  5440217 ttgatttaagtgtatatggtcataacttttgggaaaggggtgattaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaa 5440312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 5449227 - 5449322
Alignment:
Q  241 ttgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    |||||| |||||| || | ||||||  ||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  5449227 ttgatttaagtgtatatggtcataacttttgggaaaggggtgattaatgaaccataacattgattcaagtcaaatgggtgttttctctcatgtgaa 5449322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 12852079 - 12852023
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  12852079 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 12852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 12857192 - 12857136
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  12857192 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 12857136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 26051424 - 26051368
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26051424 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26051368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 26056537 - 26056481
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26056537 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26056481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 26060783 - 26060727
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26060783 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 26065896 - 26065840
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  26065896 tgttggtgatttccaaaataatggaatcactttagaaccaaaagttgtaactcttca 26065840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 14610618 - 14610521
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  |||||||||||||||||| |||  ||||| |||||||||    
T  14610618 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagtcaaagaggtgctttctctcatgtgaa 14610521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 4181276 - 4181330
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactctt 100  Q
    |||||||||||| |||||||||||||| |||||| |||||||||||| |||||||    
T  4181276 tgttggtgatttccaaaataatggaatcactttaaaatcaaaagttgcaactctt 4181330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 12851965 - 12851868
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| ||| |||||||||||||| |||  |||  ||||| |||||||||    
T  12851965 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagttaaataggtgctttctctcatgtgaa 12851868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 12857078 - 12856981
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  12857078 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 12856981  T

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Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 26051310 - 26051213
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26051310 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26051213  T

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Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 26056423 - 26056326
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26056423 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26056326  T

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Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 26060669 - 26060572
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26060669 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26060572  T

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Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 336
Target Start/End: Complemental strand, 26065782 - 26065685
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| |||  ||||| |||||||||    
T  26065782 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgctttctctcatgtgaa 26065685  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 268 - 336
Target Start/End: Original strand, 4181347 - 4181415
Alignment:
Q  268 tttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||||||  ||| |||||| |||| ||||    
T  4181347 tttggcaaaggggtgcttaatgaaccttaacattgattcaagtcaaaatggtgttttctctcatatgaa 4181415  T

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Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 37459806 - 37459877
Alignment:
Q  267 ctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaatg 338  Q
    |||||||||| | |||||||||||||||||||||  |||||| ||||| | || |||||| |||||||||||    
T  37459806 ctttggcaaatgagtgtttaatgaaccataacatcaattcaaatcaaatgcgtgttttctctcatgtgaatg 37459877  T

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Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 4181347 - 4181389
Alignment:
Q  209 tttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  4181347 tttggcaaaggggtgcttaatgaaccttaacattgattcaagt 4181389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 12857077 - 12857007
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  12857077 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 12857007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 14610617 - 14610547
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  14610617 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 14610547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 26051309 - 26051239
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26051309 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26051239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 26056422 - 26056352
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26056422 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26056352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 26060668 - 26060598
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26060668 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26060598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 26065781 - 26065711
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  26065781 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 26065711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 35352120 - 35352166
Alignment:
Q  45 atgttggtgattttcaaaataatggaattactttagaatcaaaagtt 91  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||    
T  35352120 atgttggtgatttccgaaataatgaaattactttagaatcaaaagtt 35352166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 5440217 - 5440286
Alignment:
Q  182 ttgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||| ||||||||||| |||| || ||||| ||||||||| ||| |||||| || |||||||||||||    
T  5440217 ttgatttaagtgtatatggtcataacttttgggaaaggggtgattaatgaaccataacattgattcaagt 5440286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 5449227 - 5449296
Alignment:
Q  182 ttgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||| ||||||||||| |||| || ||||| ||||||||| ||| |||||| || |||||||||||||    
T  5449227 ttgatttaagtgtatatggtcataacttttgggaaaggggtgattaatgaaccataacattgattcaagt 5449296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 12851964 - 12851894
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | |  |||||||||||||    
T  12851964 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatgacattgattcaagt 12851894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 12857156 - 12857107
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  12857156 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 12857107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 14610696 - 14610647
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  14610696 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 14610647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 26051388 - 26051339
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26051388 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26051339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 26056501 - 26056452
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26056501 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26056452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 26060747 - 26060698
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26060747 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26060698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 26065860 - 26065811
Alignment:
Q  102 accaagagttgtaactcttcatgagaatcttttatatacattggaacatt 151  Q
    ||||| ||||||||||||||||| ||| | || |||||||||||||||||    
T  26065860 accaaaagttgtaactcttcatgggaaccattcatatacattggaacatt 26065811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 35352236 - 35352289
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaacc 234  Q
    |||||||||||||||||| ||||| |||||||  ||| ||||||||| ||||||    
T  35352236 attgattcaagtgtatataatcataacctttgataaatgggtgcttaatgaacc 35352289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 4181329 - 4181389
Alignment:
Q  132 tttatatacattggaacatttggcaaaagggtgcttaatgaacctttgaattgattcaagt 192  Q
    ||||||||||| | | | ||||||||| ||||||||||||||||||   ||||||||||||    
T  4181329 tttatatacatagaatcttttggcaaaggggtgcttaatgaaccttaacattgattcaagt 4181389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 35352235 - 35352311
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaag 315  Q
    ||||||||||||||| ||  ||||||| |||||  ||| ||||| ||||||||||| | | |||| |||||||||||    
T  35352235 cattgattcaagtgtatataatcataacctttgataaatgggtgcttaatgaaccaaatcgttgaatcaagtcaaag 35352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 1820 - 1876
Alignment:
Q  46 tgttggtgattttcaaaataatggaattactttagaatcaaaagttgtaactcttca 102  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  1820 tgttggtgattttcaaaataatggaatcactttagaaccaaaagttgtatctcttca 1876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 336
Target Start/End: Original strand, 1934 - 2031
Alignment:
Q  239 cattgattcaagtgtttaagatcataatctttggcaaaagggtgtttaatgaaccataacattgattcaagtcaaaggggtattttctatcatgtgaa 336  Q
    ||||||||||||| | || | | |||| |||||||||||||||| |||||||| |||  ||||||||||||| |||| ||| |||||| |||||||||    
T  1934 cattgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagttaaagaggtgttttctctcatgtgaa 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Original strand, 1935 - 2005
Alignment:
Q  181 attgattcaagtgtatatgatcatgacctttggcaaaggggtgcttagtgaaccttagcattgattcaagt 251  Q
    |||||||||||| |||||| | || |||||||||||| ||||||||| |||| | | ||||||||||||||    
T  1935 attgattcaagtatatatggttataacctttggcaaaagggtgcttaatgaatcatggcattgattcaagt 2005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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