View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_4 (Length: 791)
Name: NF18947_low_4
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 121 - 659
Target Start/End: Complemental strand, 45858461 - 45857916
Alignment:
| Q |
121 |
aggctcagagtgatgtgtctcttaggaagcagtcatataaccaaaagcatatatgtgtaacacatggtttttcatggtttcatgttttttcctttctaac |
220 |
Q |
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| T |
45858461 |
aggctcagaatgatgtgtctcttaggaagcagtcatataaccaaaagcatatatgtgtaacacatggtttttcatggtttcatgttttttcctttctaac |
45858362 |
T |
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| Q |
221 |
tacagatttttatggatatgaagattaagaaaaatattataacttgaagaactatatctacatgagtgtctcaaactcttgttctatcataaactgatta |
320 |
Q |
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| T |
45858361 |
tacagatttttatggatatgaagattaagaaaaatattataacttgaagaactatatctacctgagtgtctcaaactcttgttctatcataaactgatta |
45858262 |
T |
|
| Q |
321 |
gatttatggtaaaatgacagaacttgaggctcaaaatgaagatacttttactttggcaatttaaaagcttggctaattgtaatattaccacaggatgatt |
420 |
Q |
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| T |
45858261 |
gatttatggtaaaatgacagaacttgaggctcaaaatgaagatacttttactttggcaatttaaaagcttggctaattgtaatattaccacaggatgatt |
45858162 |
T |
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| Q |
421 |
catctcaatcatccagcaaaagggcgtcagtgtttgccacgtaaccaaaccctttgatatgtagaagcaaattgtctaaaactaaagatatagaagcgga |
520 |
Q |
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| T |
45858161 |
catctcaatcatcaagcaaaagggcgtcagtgtttgccacataaccaaaccctttgatatgtagaagcaaattgtctaaaactaaagatatagaagcgga |
45858062 |
T |
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| Q |
521 |
gtcgc---------tgtctttggctataaacttgtggatttcattattcacttcaatccaactacaagccagttcttttacaactccacttatgtccatt |
611 |
Q |
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| T |
45858061 |
gtcgcgacgagctgtatcattggccataaacttgtggatttcattattcacttcaatccaactacaacccggttcttttcc--ctccacatatgtccatt |
45857964 |
T |
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| Q |
612 |
ttttccctcaaccttctgacatttacccacataccttttgatgcaaat |
659 |
Q |
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| T |
45857963 |
ttttccctcaaccttctgacatttacccacataccttttgatgcaaat |
45857916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 45982790 - 45982883
Alignment:
| Q |
7 |
tgagatgttgggatctttgagtagcttccgcgttgagtttgttggatgcatccttgaaacacaatcatcaatcacgttatagaatttgcaataac |
101 |
Q |
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| T |
45982790 |
tgagatgttgggatctttgagtagcttcagcattgagcttggtggatgcttccctgaaacacaatgatcaattacgctgtagaa-ttgcaataac |
45982883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 45868215 - 45868155
Alignment:
| Q |
7 |
tgagatgttgggatctttgagtagcttccgcgttgagtttgttggatgcatccttgaaaca |
67 |
Q |
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| T |
45868215 |
tgagatgttgggatctttgagtagcttcagcattgagcttggtggatgcttccctgaaaca |
45868155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 350 - 773
Target Start/End: Original strand, 40967901 - 40968333
Alignment:
| Q |
350 |
ctcaaaatgaagatacttttactttggcaatttaaaagcttggctaattgtaatattaccacaggatgattcatctcaatcatccagcaaaagggcgtca |
449 |
Q |
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| T |
40967901 |
ctcaaaatgaagatacttttactttggcaatttaaaagcctggctaattgtaatattaccacaagatgattcatctcaatcatcaagtaaaagggcgtca |
40968000 |
T |
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| Q |
450 |
gtgtttgccacgtaaccaaaccctttgatatgtagaagcaaattgtctaaaactaaagatatagaagcggagtcgc---------tgtctttggctataa |
540 |
Q |
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| T |
40968001 |
gtgtttgccatataaccaaaccctttgatctgtagaagcaaattgtctaaaactaaagatataggagcggagtcgcgatgagctgtgtctttggcaataa |
40968100 |
T |
|
| Q |
541 |
acttgtggatttcattattcacttcaatccaactacaagccagttcttttacaactccacttatgtccattttttccctcaaccttctgacatttaccca |
640 |
Q |
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| T |
40968101 |
acttgtggatttcattattcacttcaatccaactacaacccggttcttttacaactccacttatgtccattttttccctcaaccttctgacatttaccca |
40968200 |
T |
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| Q |
641 |
cataccttttgatgcaaatatatttgaaagtaatacatatgatgcactatctgctgggtcacatgatattgccatctcagctgcatatgttcccagttca |
740 |
Q |
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| T |
40968201 |
cataccttttgatgcaaatatatttgaaagtaatacatatgatccactatctgctgggttacatgatattgccatctcagctgcatatgttcccagttca |
40968300 |
T |
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| Q |
741 |
acattaccggaaactctgcatgcactgagtagg |
773 |
Q |
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| T |
40968301 |
acatttccagaaactctgcatgcactgagtagg |
40968333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 40967841 - 40967906
Alignment:
| Q |
230 |
ttatggatatgaagattaagaaaaatattataacttgaagaactatatctacatgagtgtctcaaa |
295 |
Q |
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| T |
40967841 |
ttatggatatgaagattaagaaaaatattataacttgaagaactatatctacatgagtgtctcaaa |
40967906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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