View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_40 (Length: 348)
Name: NF18947_low_40
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 1771440 - 1771769
Alignment:
| Q |
1 |
aaacaacagataactccatttatttataatagaaatataagtccagcccatattcttttgtttttgggacgtgataggcacaaataccatatactattac |
100 |
Q |
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| T |
1771440 |
aaacaacagataactccatttattcataattgaaatataagtccagcccctattcttttgtttttgggacgtgatatgcacaaataccatatactattac |
1771539 |
T |
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| Q |
101 |
attaaaattaaggattaatacttttgtgcaatctttagaagggtggaactaagcttctttggtttagagaacatgaccatgtgatcagaatcctctatca |
200 |
Q |
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| T |
1771540 |
attaaaattaaggattaatacttttgtacaatctttagaagggtggaactaagcttctttggtttagacaacatgaccatgtgatcagaatcctctatca |
1771639 |
T |
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| Q |
201 |
cttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaatcctctgttatcaaattatcacttttgcttatgataaaaattttaggtac |
300 |
Q |
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| T |
1771640 |
cttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaatcctctgttatcaaattatcacttttgcttatgataaaaaatttaggtac |
1771739 |
T |
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| Q |
301 |
tcttccatttctatcattggtaactgttgt |
330 |
Q |
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| T |
1771740 |
tcttccatttctatcattggtaactgttgt |
1771769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 330
Target Start/End: Original strand, 1800419 - 1800589
Alignment:
| Q |
160 |
tggtttagagaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaatcctctgtt |
259 |
Q |
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| T |
1800419 |
tggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacatatggacgagtattctcaatcatccatatttgaaaatcctctgtc |
1800518 |
T |
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| Q |
260 |
atcaaattatcacttttgcttatgataaaaattttaggtactcttccatttctatcattggtaactgttgt |
330 |
Q |
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| T |
1800519 |
aacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctatgtttggtaactcttgt |
1800589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 1782640 - 1782719
Alignment:
| Q |
161 |
ggtttagagaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatcca |
240 |
Q |
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| T |
1782640 |
ggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaattatcca |
1782719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 1776205 - 1776293
Alignment:
| Q |
152 |
agcttctttggtttagagaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatcca |
240 |
Q |
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| T |
1776205 |
agctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaattatcca |
1776293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 230
Target Start/End: Complemental strand, 19790075 - 19790003
Alignment:
| Q |
158 |
tttggtttagagaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctct |
230 |
Q |
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|||||||| |||||||||||||| ||||| ||||||| |||||| | ||||| || |||||||| |||||| |
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| T |
19790075 |
tttggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatggaccagttctct |
19790003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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