View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_46 (Length: 298)
Name: NF18947_low_46
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 17646268 - 17646003
Alignment:
| Q |
13 |
aaaatcatctaaaacaacctttcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17646268 |
aaaatcatctaaaacaacctttcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaata |
17646169 |
T |
|
| Q |
113 |
tttaaaaatatattccatacttagtaaagcaatataaaataaaataagacattttaaccagaaatccccttgtatatagttctttatatcacaaaagagt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17646168 |
tttaaaaatatattccatacttagtaaagcaatataaaataaaataagacattttaaccagaaatccccttgtatatagttatttatatcacaaaagagt |
17646069 |
T |
|
| Q |
213 |
atccctaaatnnnnnnntctcatatgatgttgtgaattaagataaacttgactctagaatggagcagc |
280 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17646068 |
atccctaaataaaaaaatctcatatgatgttgtgaattaagataaacttga--ctagaatggagcagc |
17646003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 16475073 - 16475276
Alignment:
| Q |
13 |
aaaatcatctaaaacaacctttcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaata |
112 |
Q |
| |
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||||||||| ||| ||||| || ||||||| |||| ||||||| |||||||| | ||||||||||||||||| ||| |||||| |||||||| ||||||| |
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| T |
16475073 |
aaaatcatccaaagcaaccatt-gaagaaataggattataaatattgaagaaatacataatatcttttattgtaaattcactttccaaataaaatcaata |
16475171 |
T |
|
| Q |
113 |
tttaaaaatatattccatacttagtaaagcaatataa-aataaaataagacattttaaccagaaatccccttgtatatagttctttatatcacaaaagag |
211 |
Q |
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||||||||| ||| ||||| ||||||| ||||||| ||||||| |||||||| | || ||||||||||||||||||| || ||||||| ||||||||| |
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| T |
16475172 |
tttaaaaattaatttcatacagagtaaagaaatataacaataaaagaagacattatgacaagaaatccccttgtatatatttatttatattacaaaagag |
16475271 |
T |
|
| Q |
212 |
tatcc |
216 |
Q |
| |
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||||| |
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|
| T |
16475272 |
tatcc |
16475276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 17606192 - 17606074
Alignment:
| Q |
13 |
aaaatcatctaaaacaacctttcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaata |
112 |
Q |
| |
|
||||||||| ||||||||||| |||| ||| | ||||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||||| ||||||| |
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| T |
17606192 |
aaaatcatccaaaacaacctt-cgaacaaataagaatataaatgttgaagaagtacatagtatcttttattgcaaattcacttgccaaataaaatcaata |
17606094 |
T |
|
| Q |
113 |
tttaaaaatatattccatac |
132 |
Q |
| |
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||||||||| ||||||||| |
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| T |
17606093 |
tttaaaaattaattccatac |
17606074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 17632662 - 17632506
Alignment:
| Q |
63 |
aagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatatattccatacttagtaaagcaatataa-aataaaataaga |
161 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||||| |||| ||||||||| |||| || ||||||||| |||||||| ||||||| ||||||| |||| |
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| T |
17632662 |
aagtacataatatattcgattgagaaatcacttgccacataaaatcaatattaaaaacta-attccatacatagtaaagaaatataacaataaaagaaga |
17632564 |
T |
|
| Q |
162 |
cattttaaccagaaatccccttgtatatagttctttatatcacaaaagagtatcccta |
219 |
Q |
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||| | || |||||||||||||| | || || ||||||| |||||| ||||||||| |
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|
| T |
17632563 |
catcatgacaagaaatccccttgtctttatttatttatattacaaaatcgtatcccta |
17632506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 17675687 - 17675776
Alignment:
| Q |
34 |
tcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatat |
123 |
Q |
| |
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|||| |||| |||||| |||||| ||||||||| ||||||||| |||||| ||||| |||||||||||||||| | || |||||||||| |
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| T |
17675687 |
tcgatgaaataggaatctaaatgatgaagaagtacataatatcatttatttcaaaattacttgccaaataagattattacttaaaaatat |
17675776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 17650655 - 17650558
Alignment:
| Q |
34 |
tcgaagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatatattccata |
131 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||| ||||||||| |||||| ||||| ||||||||||||| || | || |||||| |||||| |||| |
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|
| T |
17650655 |
tcgatgaaataggaatctaaatgatgaagaagtacataatatcatttatttcaaaattacttgccaaataatattattacttaaaagtatattacata |
17650558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 17663393 - 17663561
Alignment:
| Q |
46 |
gaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatatattccatac-ttagtaaagcaa |
144 |
Q |
| |
|
|||| |||||| ||||||| ||||||||| ||| || ||||| |||||||||| ||||| | || ||||||||||||| ||||| ||||||| | |
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|
| T |
17663393 |
gaatctaaatgatgaagaaaaacataatatcgtttctttgaaaattacttgccaaagaagattattacttaaaaatatattacatacaatagtaaacaca |
17663492 |
T |
|
| Q |
145 |
tataa-aataaaataagacattttaaccagaaatccccttgtatatagttctttatatcacaaaagagtatc |
215 |
Q |
| |
|
||||| |||||||||||| |||| ||| || ||| | | | ||||||| ||||||| ||||||||||||| |
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|
| T |
17663493 |
tataacaataaaataagaaatttcaacaagcaat---catctgtatagttatttatattacaaaagagtatc |
17663561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 32670697 - 32670570
Alignment:
| Q |
37 |
aagaaaaaggaatataaatgttgaagaagtccataatatcttttattgaaaaatcacttgccaaataagatcaatatttaaaaatatattccatacttag |
136 |
Q |
| |
|
|||||| |||||| ||| || |||| |||| ||||||| ||| |||| ||||||||||| |||||||| | || ||||||||||||| ||||| || |
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| T |
32670697 |
aagaaataggaatctaactgatgaaaaagtatataatatttttcattgcaaaatcacttgtcaaataag---agtacttaaaaatatatt-catacacag |
32670602 |
T |
|
| Q |
137 |
taaagcaatataa-aataaaataagacatttt |
167 |
Q |
| |
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||||| ||||||| ||||||||||| |||||| |
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|
| T |
32670601 |
taaagaaatataacaataaaataaggcatttt |
32670570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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