View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_49 (Length: 270)
Name: NF18947_low_49
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 42474160 - 42473902
Alignment:
| Q |
12 |
atgaatataagttaatgtgaataaaataagggtttgattataagtttatgtagaagaaaaattgaagtatggtggtcagcaaatcataattggctaatta |
111 |
Q |
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| T |
42474160 |
atgaatataagttaatgtgaataaaataagggtttgattataagtttatgtagaagaaaaattgaagtatggtggtcagcaaatcataattggctaatta |
42474061 |
T |
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| Q |
112 |
actttcaaagtatgattgctaatgactcaagaacatggtcaatttgattagattaaaaaagaaaagaacatgttcaatttataaagaaattgttctgact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474060 |
actttcaaagtatgattgctaatgactcaagaacatggtcaatttgattagattaaaaaagaaaagaacatgttcaatttataaagaaattgttctgact |
42473961 |
T |
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| Q |
212 |
tctctttgtgcattgaacacggaaccaacagagagtttgttgccactgaatcgggttct |
270 |
Q |
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| T |
42473960 |
tctctttgtgcattgaacacggaaccaacagagagtttgttgccactgaatcgggttct |
42473902 |
T |
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