View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_5 (Length: 689)

Name: NF18947_low_5
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_5
NF18947_low_5
[»] chr2 (8 HSPs)
chr2 (267-668)||(33019365-33019766)
chr2 (8-269)||(33021023-33021284)
chr2 (267-616)||(33025815-33026163)
chr2 (267-563)||(33037364-33037660)
chr2 (15-269)||(33038929-33039183)
chr2 (13-126)||(33027433-33027546)
chr2 (273-644)||(33023377-33023741)
chr2 (173-263)||(33027356-33027445)
[»] chr6 (1 HSPs)
chr6 (316-495)||(24418056-24418235)
[»] chr7 (1 HSPs)
chr7 (415-590)||(27754828-27755003)
[»] chr3 (5 HSPs)
chr3 (447-556)||(7443711-7443820)
chr3 (415-562)||(12217241-12217388)
chr3 (425-490)||(9566517-9566582)
chr3 (438-562)||(7428315-7428439)
chr3 (465-565)||(37754091-37754191)
[»] chr1 (1 HSPs)
chr1 (469-541)||(25869469-25869541)


Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 267 - 668
Target Start/End: Complemental strand, 33019766 - 33019365
Alignment:
Q  267 gaatcatattcaattttgagacaatcagggtaactgacttgtgtttgtttgacagtaaacgttggaaaatcagagagcattggggaatcaaagagaacta 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33019766 gaatcatattcaattttgagacaatcagggtaactgacttgtgtttgtttgacagtaaacgttggaaaatcagagggcattggggaatcaaagagaacta 33019667  T
Q  367 acttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaatt 466  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019666 actcgtctaagtcgttgcgagagcttagcatgagacgatggcgagtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaatt 33019567  T
Q  467 gaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcgga 566  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019566 gactgacttgcagaggcatcgaagttgaataaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcgga 33019467  T
Q  567 gttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgatgaaaaaggaagaggataaaagg 666  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019466 gttgttgttgttagggttccggtgaaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgatgaaaaaggaagaggataaaagg 33019367  T
Q  667 gg 668  Q
    ||    
T  33019366 gg 33019365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 33021284 - 33021023
Alignment:
Q  8 cgaagaatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttg 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021284 cgaacaatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttg 33021185  T
Q  108 aatgacaacaagagactctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagag 207  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021184 aatgacaacaagaggctctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagag 33021085  T
Q  208 gtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccacgatgaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33021084 gtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccacgatgaa 33021023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 267 - 616
Target Start/End: Complemental strand, 33026163 - 33025815
Alignment:
Q  267 gaatcatattcaattttgagacaatcagggtaactgacttgtgtttgtttgacagtaaacgttggaaaatcagagagcattggggaatcaaagagaacta 366  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  33026163 gaatcatattcaattttgagacaatcagggtaactgagttgtgtttggttgatagtaaacgttggaaaatcagagggcatcggggaatcaaagagaacta 33026064  T
Q  367 acttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaatt 466  Q
    ||| |||||| ||||||  |||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||| ||||| |||||||||||||| |||||    
T  33026063 actcgtctaactcgttggtagagcttagcatgagacggtggtgcgtgtttgacatgcgaagatgtttttaagcgaattt-ggatcagaaactaacgaatt 33025965  T
Q  467 gaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcgga 566  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||    
T  33025964 gaatgacttgcataggcatcgaagttgaatgaggagttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtaggtagtggatga 33025865  T
Q  567 gttgttgttgttagggttccggtggaggtaagagtgagttgatgcgtctt 616  Q
    |  ||||| |||||||||||||||||||||||||||||||||||||||||    
T  33025864 gcggttgtagttagggttccggtggaggtaagagtgagttgatgcgtctt 33025815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 267 - 563
Target Start/End: Complemental strand, 33037660 - 33037364
Alignment:
Q  267 gaatcatattcaattttgagacaatcagggtaactgacttgtgtttgtttgacagtaaacgttggaaaatcagagagcattggggaatcaaagagaacta 366  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33037660 gaatcatattcaattttgagacaatcagggtaactgagttgtgtctggtttacagtaaacgttggaaaatcagagggcattggggaatcaaagagaacta 33037561  T
Q  367 acttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaatt 466  Q
    ||| ||||||||||||   |||||||| ||||||| | ||| | ||||||||||||| ||||||||| ||||| ||||| |||||||||| ||| |||||    
T  33037560 actcgtctaagtcgttattagagcttaacatgagatggtggcgcgtgtttgacatgcgaagatgtttcttagcgaatttaggatcagaaattaacgaatt 33037461  T
Q  467 gaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggc 563  Q
    ||  ||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  33037460 gatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgagatcaaacggaagagtgggtagtggc 33037364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 33039183 - 33038929
Alignment:
Q  15 tatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttgaatgaca 114  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  33039183 tatacaaaatcttaggttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttacttgtgttttctttgaatgaca 33039084  T
Q  115 acaagagactctgacataatacatgaaattatgtagaaacagaaggcaatcatataacaacaagaggctcttaataatcatcaattaagagaggtttccg 214  Q
    ||||||| |||| |||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||     
T  33039083 acaagaggctctaacataatacatgcaattatgtacaaacagaaggaaatcatatgacaacaagaggctcttaataatcatcaattaagcgaggtttcca 33038984  T
Q  215 agatccacaatttaccttg-tcatcacattattccacatgtcgtaaccacgatgaa 269  Q
    ||| ||| || |||||||| |  ||||| |||||||||||||||||||||||||||    
T  33038983 agaaccataacttaccttgttggtcaca-tattccacatgtcgtaaccacgatgaa 33038929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 33027546 - 33027433
Alignment:
Q  13 aatatataaaatcttacgttacttgatagtaaaaacacaatcaaatcaagaggctcttatagataaattttctttctttatttgtgtattctttgaatga 112  Q
    |||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  33027546 aatatacagaatcttaggttacttgatagtaaaagcacaatcaaatcaagaggctcttatagataaattttctttatttgcttgtgtattctttgaatga 33027447  T
Q  113 caacaagagactct 126  Q
     |||||||| ||||    
T  33027446 taacaagaggctct 33027433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 273 - 644
Target Start/End: Complemental strand, 33023741 - 33023377
Alignment:
Q  273 tattcaattttgagacaatcagggtaactgacttgtgtttgtttgacagtaaacgttggaaaatcagagagcattggggaatcaaagagaactaacttgt 372  Q
    ||||||||||||||||||| |||||||||||  ||||||||  ||| ||||||||||| || |||| |  || || |||||||| ||||||||||||       
T  33023741 tattcaattttgagacaattagggtaactgagctgtgtttgcgtgatagtaaacgttgaaatatcacaaggccttcgggaatcatagagaactaactccc 33023642  T
Q  373 ctaagtcgttgcgagagcttagcatgagacgatggtgagtgtttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatga 472  Q
    |||||||||||  |||||||| ||| ||| | |||    |  ||||||||| ||  ||||| || || |||   |||||| | | ||| |||||||| ||    
T  33023641 ctaagtcgttggtagagcttaccataagatggtggctcatagttgacatgcgaaagtgtttctttgcgaatacgggatcacacattaacgaattgaagga 33023542  T
Q  473 cttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgtt 572  Q
    |||||| || ||| ||||||||| ||||| ||| || |||| ||| || || |||||||| | |||||| ||||||||||| | |||||||||||  | |    
T  33023541 cttgcaaagacattgaagttgaaggaggagtttcacagggattctacaaaggatttcagcaaggagatcaaatggaagagttgttagtggcggagcggat 33023442  T
Q  573 gttgttagggttccggtggaggtaagagtgagttgatgcgtctttgttacgattgtttcctccatgagtgat 644  Q
    |||||||| ||||       ||||||| ||| ||| ||  ||||||||  ||||||||||||||||||||||    
T  33023441 gttgttagagttc-------ggtaagaatgaattgttgtatctttgttgtgattgtttcctccatgagtgat 33023377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 33027445 - 33027356
Alignment:
Q  173 aacaagaggctcttaataatcatcaattaagagaggtttccgagatccacaatttaccttgtcatcacattattccacatgtcgtaaccac 263  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||  |||| |||||||||    
T  33027445 aacaagaggctcttaataatcattaattaagagaggtttccgagatccataatttaccttgttatcaca-tattcttcatgccgtaaccac 33027356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 316 - 495
Target Start/End: Original strand, 24418056 - 24418235
Alignment:
Q  316 tgacagtaaacgttggaaaatcagagagcattggggaatcaaagagaactaacttgtctaagtcgttgcgagagcttagcatgagacgatggtgagtgtt 415  Q
    |||||||| | |||| |||||||||| | ||| |||||| |||||||||||| |   |||||||||||  |||  ||| |||||| |||||| |  || |    
T  24418056 tgacagtagaggttgaaaaatcagagggtattagggaattaaagagaactaagtgacctaagtcgttggtagacattaacatgaggcgatggcgcctggt 24418155  T
Q  416 tgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaa 495  Q
    ||||| || ||| || || || || ||||| |||||||| | |||||||||||| ||||||||||| || ||||||||||    
T  24418156 tgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaa 24418235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 415 - 590
Target Start/End: Complemental strand, 27755003 - 27754828
Alignment:
Q  415 ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag 514  Q
    |||||| || ||| ||||| || |||||||||||||| || | ||| ||||| || ||||| |||||||||| ||||||||  || |  || || || ||    
T  27755003 ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaag 27754904  T
Q  515 tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcggagttgttgttgttagggttccggtg 590  Q
      |||| ||||| ||  ||||||||||||||| ||||||||| ||||||||||  | || |||||||||| |||||    
T  27754903 catgcacagaatctcttcgatgagatcgaatgtaagagtgggaagtggcggaggagatgatgttagggtttcggtg 27754828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 556
Target Start/End: Original strand, 7443711 - 7443820
Alignment:
Q  447 ggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatg 546  Q
    |||||||||| ||| ||||||||  |||| |||||||| |||||||| ||||| | ||| || || || ||||| ||||| |||| || ||||||||| |    
T  7443711 ggatcagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagg 7443810  T
Q  547 gaagagtggg 556  Q
    ||||||||||    
T  7443811 gaagagtggg 7443820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 415 - 562
Target Start/End: Complemental strand, 12217388 - 12217241
Alignment:
Q  415 ttgacatgcaaagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggag 514  Q
    |||||| || ||||||||| |  |||||||| |||||||| | ||| |||||||| ||||| |||||||| ||||| |||||||| |  |||||||| |     
T  12217388 ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaat 12217289  T
Q  515 tctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtgg 562  Q
    ||| || | |||||| || |  ||||| || ||||| |||||||||||    
T  12217288 tctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagtgg 12217241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 9566517 - 9566582
Alignment:
Q  425 aagatgttttttagcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaag 490  Q
    |||||||||||| || ||||||||||||||||  |  |||||||| |||||||||||||| |||||    
T  9566517 aagatgtttttttgcgaattttggatcagaaataagagaattgaaggacttgcagaggcaccgaag 9566582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 438 - 562
Target Start/End: Original strand, 7428315 - 7428439
Alignment:
Q  438 gcaaattttggatcagaaactaatgaattgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatga 537  Q
    |||||||| |||||||| | ||| ||||||||  |||| |||||||| ||||| |||||||| |  |||||||| | ||| || | |||||| || |  |    
T  7428315 gcaaatttgggatcagagattaaagaattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaa 7428414  T
Q  538 gatcgaatggaagagtgggtagtgg 562  Q
    |||| || ||||| |||||||||||    
T  7428415 gatcaaacggaagcgtgggtagtgg 7428439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 465 - 565
Target Start/End: Original strand, 37754091 - 37754191
Alignment:
Q  465 ttgaatgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatcgaatggaagagtgggtagtggcg 564  Q
    ||||| ||||| |||||||| || ||||| | ||| |  || || |||||||||||||||||||| ||||  |  ||||| ||||||||||| |||||||    
T  37754091 ttgaaggacttacagaggcaccggagttgtaagagtaacttgacagggagtctgcatagaatttctgcgaccaattcgaaaggaagagtgggcagtggcg 37754190  T
Q  565 g 565  Q
    |    
T  37754191 g 37754191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 541
Target Start/End: Original strand, 25869469 - 25869541
Alignment:
Q  469 atgacttgcagaggcatcgaagttgaatgaggatttttaccgggagtctgcatagaatttcagcgatgagatc 541  Q
    |||||||||| | ||| || ||||| ||||||| ||| |  |||| ||||||||| |||||||||||||||||    
T  25869469 atgacttgcaaatgcagcggagttgcatgaggaatttgatggggaatctgcataggatttcagcgatgagatc 25869541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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