View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_50 (Length: 270)
Name: NF18947_low_50
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 9171171 - 9170937
Alignment:
| Q |
21 |
gttgatccaaacacaagaaaaatgcctagtcaataagttaaaaatgtttttcctactattgatgtcattatgtgaacctaatacaatcaaaatatggatt |
120 |
Q |
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| T |
9171171 |
gttgatccaaacacaagaaaaatgcctagtcgataagttaaaaatgtttttcctactattgatgtcattatgtgaacctaataccatcaaaatatggatt |
9171072 |
T |
|
| Q |
121 |
gcaatataatgtgtcttggtccaaatttctaactattttaatttcttcctacgtgcattaatattataaattgatgttttaattcattttttatactata |
220 |
Q |
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| T |
9171071 |
gcaatataatgtgtcttggtccaaatttctaactattttaatttcttcctacgtgcattaatattataaattgatgttttaattcattttttatactata |
9170972 |
T |
|
| Q |
221 |
actagcgaaaagatgggcactcacgtgtccgtttt |
255 |
Q |
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|||| |||||||| |||||||||||||||||||| |
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| T |
9170971 |
actaacgaaaagacaggcactcacgtgtccgtttt |
9170937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 53352991 - 53353024
Alignment:
| Q |
217 |
tataactagcgaaaagatgggcactcacgtgtcc |
250 |
Q |
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| T |
53352991 |
tataactagcaaaaagatgggcactcacgtgtcc |
53353024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 25610937 - 25610967
Alignment:
| Q |
217 |
tataactagcgaaaagatgggcactcacgtg |
247 |
Q |
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| T |
25610937 |
tataactagcgaaaagatgggcactcacgtg |
25610967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 26536085 - 26536118
Alignment:
| Q |
217 |
tataactagcgaaaagatgggcactcacgtgtcc |
250 |
Q |
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| T |
26536085 |
tataactagcgaaaagataggcactcacgtgtcc |
26536118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 20296158 - 20296126
Alignment:
| Q |
218 |
ataactagcgaaaagatgggcactcacgtgtcc |
250 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
20296158 |
ataactagcgaaaagatggacactcacgtgtcc |
20296126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 54768215 - 54768187
Alignment:
| Q |
221 |
actagcgaaaagatgggcactcacgtgtc |
249 |
Q |
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| T |
54768215 |
actagcgaaaagatgggcactcacgtgtc |
54768187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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