View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_51 (Length: 266)
Name: NF18947_low_51
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 48041706 - 48041799
Alignment:
| Q |
1 |
aatataaatacataatagatgcatgatgaattatagatttgtatttctttatttatctactgtttaaagagtccaaattaatataaattcaatg |
94 |
Q |
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| T |
48041706 |
aatataaatacataatagatgcatgatgaattatagatttgaatttctttatttatctactgtttaaagagtccaaattaatataaattcaatg |
48041799 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 48041880 - 48041966
Alignment:
| Q |
172 |
cattgacaatcatctttataaaacaaaatggtttacaatcatcaaattcttgtggtaaagtcgcaataaaaatacgtgtcctatgct |
258 |
Q |
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| T |
48041880 |
cattgacaatcatctttataaaacaaaatggtttacaatcatcaaattcttgtggtaaagtcgcaataaaaatacgtgtcctttgct |
48041966 |
T |
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