View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_52 (Length: 264)
Name: NF18947_low_52
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17646619 - 17646855
Alignment:
| Q |
1 |
ttattggttcaacatcgagatatcaattaaatttgcttattttgtatatcaatattacatttatgagtctagttttggtttgatttatattctatgtttg |
100 |
Q |
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| T |
17646619 |
ttattggttcaacatcgagatatcaattaaatttgcttattttgtatatcaatattacatttatgagtctagttttggtttgatttatattctatgtttg |
17646718 |
T |
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| Q |
101 |
aaaccagtaaaatatgacttgtgacaaatataattccctgaactctcctctcaattttatttttaatatgtctccctcactaaagcatgtatttataaag |
200 |
Q |
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| T |
17646719 |
aaaccactaaaatatgacttgtgacaaatataattccctgaactctcctctcgattttatttttaatatgtctccctcactaaagcatgtatttataaag |
17646818 |
T |
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| Q |
201 |
tttttgttggtgtgttattaatagttgggcctttcca |
237 |
Q |
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| T |
17646819 |
tttttgttggtgtgttattaataattgggcctttcca |
17646855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 17606623 - 17606718
Alignment:
| Q |
70 |
tagttttggtttgatttatattctatgtttgaaaccagtaaaatatgacttgtgacaaatataattccctgaactctcctctcaattttatttttaata |
168 |
Q |
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| T |
17606623 |
tagtttaggtttgatttctattctatgtttgaaaccagt--aacatgacttgtg-gtaatgtaattccctgaactcccatttcaattttacttttaata |
17606718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17606533 - 17606594
Alignment:
| Q |
1 |
ttattggttcaacatcgagatatcaattaaatttgcttattttgtatatcaatattacattt |
62 |
Q |
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| T |
17606533 |
ttattggttaaacatcaagatatcaattaaatttgcttatattctatactaatattacattt |
17606594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 16474503 - 16474432
Alignment:
| Q |
3 |
attggttcaacatcgagatatcaattaaatttgcttattttgtatatcaatattacatttatgagtctagtt |
74 |
Q |
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| T |
16474503 |
attggttcaaaatcgagatatcaattaaattttcttattttctattctagtattacatttgtgagtttagtt |
16474432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17633018 - 17633091
Alignment:
| Q |
1 |
ttattggttcaacatcgagatatcaattaaatttgcttattttgtatatcaatattacatttatgagtctagtt |
74 |
Q |
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| T |
17633018 |
ttattggttcaaaattgagatatcgattaaatttgcttattttttatactagtattaaatttctgagtttagtt |
17633091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 17663096 - 17663057
Alignment:
| Q |
19 |
gatatcaattaaatttgcttattttgtatatcaatattac |
58 |
Q |
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| T |
17663096 |
gatatcaattaaatttgcttatttgttatatcaatattac |
17663057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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