View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_53 (Length: 256)
Name: NF18947_low_53
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 48 - 234
Target Start/End: Original strand, 37413871 - 37414057
Alignment:
| Q |
48 |
tataactacatagatgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaa |
147 |
Q |
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| T |
37413871 |
tataactacatagatgaatgtgtgtttcttttatgattatcgtgatctttttatacattattgtcaatatttcatctgtccattagacttcaccttacaa |
37413970 |
T |
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| Q |
148 |
gttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
234 |
Q |
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| T |
37413971 |
gttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
37414057 |
T |
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Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 23005651 - 23005469
Alignment:
| Q |
48 |
tataactacatagatgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaa |
147 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
23005651 |
tataactacatagctgaatgtgtgtttcttttatgatcatcatgatctttttatacatt---gtcaatatttcatctgtccattaaatttcaccttacaa |
23005555 |
T |
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| Q |
148 |
gttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
234 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23005554 |
gttatgcataattacatgcactgatatacattaaacgtgtct-agcctttaaagtataactcacatcttacttaacccttttccaca |
23005469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 16806922 - 16806743
Alignment:
| Q |
48 |
tataactacatagatgaatgtgtgtttcttttatgatcatcgtgatctttttatacattatcgtcaatatttcatctgtccattagacttcaccttacaa |
147 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
16806922 |
tataactacgtagatgaatgtgtgtttcttttatgatcatcatgatctttttatacatt---gtcaatatttcatctatccattagacttcaccttacaa |
16806826 |
T |
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| Q |
148 |
gttatgcataattacatgcactgatatgcattaaacgtgtctaagcctttaaagtataactcacatcttacttaaccctcttccaca |
234 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16806825 |
gttatgcataattacatgcactgatatgcactaaacgtgtct-agcctttaaagt---actcacatcttacttaaccctcttccaca |
16806743 |
T |
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