View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18947_low_59 (Length: 250)
Name: NF18947_low_59
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18947_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 57 - 246
Target Start/End: Complemental strand, 14094545 - 14094356
Alignment:
| Q |
57 |
attctcttaaatcagaatggtctcttgtttaatacatctaatgaaccatcattgtactgtttttgatgtcaaagcaggtgtgtgttcgtgtctctgacat |
156 |
Q |
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| T |
14094545 |
attctcttaaatcagaatggtctcttgtttaatacatctaatgaaccatcattgtactgtttttgatgtcaaagcaggggtgtgttcgtgtttctgacat |
14094446 |
T |
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| Q |
157 |
atttgtagatgttgagaagctgaaaagaattctaaggttatttagacatatatacaattctttataggttaaatatgtttttggtcctgt |
246 |
Q |
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| T |
14094445 |
atttgtagatgttgagaagctgaaaagaattctaaggttactttgacatatatacaattttttataggttaaatatatttttgatcctgt |
14094356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 14094662 - 14094616
Alignment:
| Q |
20 |
taatgcccttggactacaatgtcagaagtaatattacattctcttaa |
66 |
Q |
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| T |
14094662 |
taatgcccttggactacaatgtcagaagtaatattacattctcttaa |
14094616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 14087751 - 14087695
Alignment:
| Q |
13 |
aatatcataatgcccttggactacaatgtcagaagtaatattacattctcttaaatc |
69 |
Q |
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| T |
14087751 |
aataacataatgcccttagactataatgtcagaagtaatattacattctcttaaatc |
14087695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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