View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18947_low_69 (Length: 238)

Name: NF18947_low_69
Description: NF18947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18947_low_69
NF18947_low_69
[»] scaffold1995 (1 HSPs)
scaffold1995 (18-238)||(87-307)
[»] chr7 (2 HSPs)
chr7 (18-238)||(38546025-38546245)
chr7 (18-238)||(38552424-38552644)


Alignment Details
Target: scaffold1995 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold1995
Description:

Target: scaffold1995; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 87 - 307
Alignment:
Q  18 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 186  T
Q  118 aaatattggagcgaacacgcaaattggatgggatacatagccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  187 aaatattggagcgaacacgcgaattggatgggatacatagccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 286  T
Q  218 ttttgagtaaatgttactccc 238  Q
    || ||||||||||||||||||    
T  287 ttatgagtaaatgttactccc 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38546025 - 38546245
Alignment:
Q  18 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38546025 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 38546124  T
Q  118 aaatattggagcgaacacgcaaattggatgggatacatagccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 217  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38546125 aaatattggagcgaacacgcgaattggatgggatacatagctgtttcaaacgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 38546224  T
Q  218 ttttgagtaaatgttactccc 238  Q
    |||||||||||||||| ||||    
T  38546225 ttttgagtaaatgttattccc 38546245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38552424 - 38552644
Alignment:
Q  18 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38552424 cttagatcttccacacatagggtatgacgttacacgctacctctacgccacagcaaatgttaacgtcccagatttcttcaagaaatctcgatggccagat 38552523  T
Q  118 aaatattggagcgaacacgcaaattggatgggatacatagccgtttcaaatgatgaagcaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38552524 aaatattggagcgaacacgcgaattggatgggatacatagccgtttcaaacgatgaaacaacaaaacaaataggtgtgtgattaacgtttacaaatgtac 38552623  T
Q  218 ttttgagtaaatgttactccc 238  Q
    || ||||||||||||||||||    
T  38552624 ttatgagtaaatgttactccc 38552644  T

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